Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1393 ATGGAAACTTTGGATGCTAATTCATCATCATCATCGTCATCTCTTGGAGGGGTTAATAGTGATGATAACAATGGTAGTGTAACTTGGTATGGGATGAGGTTACCTTCTGTTAACCCCTTTCTGTCACCGGTTTCATTTCTATTGGATTATTCTGGGATTCTACGTTCTACTAATGATTCCGAGGCTGTGATTGTTAACAACGGAGTTTCTGGTTCTGGTTCGGAATTAAGGTCTCGTGTTGATACTGATACTGCCGCTTCTGTTGCTGGGAGTAGTGCAGGGGAAGTTGCAATAAGGATTATTGGAGCTGGAGAGAGTATTCAAAATCAAGTTGGGGAGTTGGGTTATGATGATTGTGGGGAGGATCTGATCGGTGAGAGAAGTGGAATGTCTGCATTGGATGATGATGATGGTGGTGGTGCTGGGAGCCGTGGGGGGATTGAGGCTAGTGAGGGGGTTCCTCTTGTGTCTTCTTCGTCATCATCGTCGTTGGCTGGAAGCGGACGGGTTGATGGTGATGCTTCTGTGAATGGATCGGAAAATAACAGCAGGGATTCATCTTCTTACCAGAGATATGATATTCAGCTTGTTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCCCTCTTGTTATTAGTTGTTTTCATCCGACAGCATTTGCAAGGTTTCTTTGTCACGATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTGAAGGGAGACAGGAAAGTTTCTTTGCTTGCTGGTATCTCTGTTGCTTTCATTCTTCACGTGATAGGCATTTACTGGTGGTATCGAAATGATGATATTTTATATCCATTGGTCATGTTACCTCCAAACCCAACACCTTTCTGGCATGCAATATTCACCATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTTAAGTGTATTCTGCTTATATATTACAAAAAGGGGAAAGGTCATAACTTCCGTCGGCAGGCTCAACTGTTGACCCTTGTTGAGTACACGCTACTGTTGTATCGTGCCTTGTTGCCTACTCCAGTTTGGTACCGTTTTTTCTTGAATAGGGAATATGGAAGTCTCTTTTCATCCCTGACCACTGGGTTGTATTTAACTTTCAAACTAACATCTGTTGTTGAGAAGGTCCAAAGCTTCATTTCTGCCTTGAAAGCGTTATCAAGAAAGGAAGTTCATTATGGGGTATATGCCACAGCAGAACAGGTTACTGCTGCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATTCACCTATCTTGTTGCGTTGCAAACACATTTTCTGCGAAGATTGTGTATCTGAGTGGTTTGAGAGAGAAAGGACTTGCCCTCTCTGCAGAGCATTGGTTAAAGCAGCTGATCTTCGGACCTTTGGAGATGGATCAACAAGTTTGTTTTTCCAGCTGTTTTAA 1449 0.4293 METLDANSSSSSSSLGGVNSDDNNGSVTWYGMRLPSVNPFLSPVSFLLDYSGILRSTNDSEAVIVNNGVSGSGSELRSRVDTDTAASVAGSSAGEVAIRIIGAGESIQNQVGELGYDDCGEDLIGERSGMSALDDDDGGGAGSRGGIEASEGVPLVSSSSSSSLAGSGRVDGDASVNGSENNSRDSSSYQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGISVAFILHVIGIYWWYRNDDILYPLVMLPPNPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQLLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQSFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1393 482 SMART ring_2 421 458 IPR001841 -
Psa2g1393 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 469 IPR013083 -
Psa2g1393 482 MobiDBLite consensus disorder prediction 153 182 - -
Psa2g1393 482 CDD RING-HC_RNFT1_like 420 459 - -
Psa2g1393 482 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 7 482 IPR044235 GO:0061630|GO:1904294
Psa2g1393 482 Pfam Zinc finger, C3HC4 type (RING finger) 419 463 - -
Psa2g1393 482 ProSitePatterns Zinc finger RING-type signature. 436 445 IPR017907 -
Psa2g1393 482 SUPERFAMILY RING/U-box 414 463 - -
Psa2g1393 482 MobiDBLite consensus disorder prediction 152 182 - -
Psa2g1393 482 ProSiteProfiles Zinc finger RING-type profile. 421 459 IPR001841 -
Psa2g1393 482 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1393 Psa-Chr2 104735595 104741522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1393 34 482 C3H Transcription Factor Family AT5G01960 63.778 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1393 - K22379 nnu:104612968 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1393 2 104735595 104741522 Psa2g1393 2 104735595 104741522 ECH