Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1375 ATGAAGTGGGAAATGGAACTCCTTACTCCTACATCATACACTGCAAACTCCAATTGGTGTATAGAAGAAAACAGAACCACAAAATGGACTCATGAAGAGAACAAACTATTCGAAAATGCTCTTGCAGTTTACGATAAGGATACTCCGGATCGGTGGCACAAAGTTGCGGAAATGATACCGGGGAAAACAGCTGGTGATGTTATGAGACAGTACAAGGAATTGGAAGATGATGTTTGTAATATAGAAGCTGGTTTGATACCAGTTCCTGGATATAGTACTCCTACTTCACCTTTTACCTTAGATTGGGTGAATAGTTCTGGTTATGATGCTTCCAAAGGAAATGGAAAGAGATCTTCTTTAGTTAGAGCTCCTGAGCATGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAAATTATTTCTACTAGGTCTAAAGAAATATGGCAAAGGTGATTGGAGAAATATTTCGCGCAATTTCGTCGTCACCAGGACTCCGACTCAAGTGGCAAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGGAAAGACAAGAGAAGGGCTAGCATTCATGACATAACAACAGTGAATCTCACAGAAAAAATTGGATCTTGTTCTTCAGAAGACACTAATGATAGGTCCACTTCGCCGCAGAATTCCATGTTACTCGCGCACCAACACCAGCAACAGCAATCAAGTTCTAGTACTACAACAAATTTTCTTTGGAGGAATGATCATCAAAATGCTATGGTTTTCAATCCAGCTCATGAACAAGTCTTCATGCCTCTTCATGGTGTTAACTCCTATGAGGTTAAAATGGAAGGCGAAAATCTTCACCAGGGTTTTGTTCATGAGTCTTCTTATCCACATAACATGGTTTTCCAAATGCAACATTATTCACATGCATAA 918 0.3987 MKWEMELLTPTSYTANSNWCIEENRTTKWTHEENKLFENALAVYDKDTPDRWHKVAEMIPGKTAGDVMRQYKELEDDVCNIEAGLIPVPGYSTPTSPFTLDWVNSSGYDASKGNGKRSSLVRAPEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEKIGSCSSEDTNDRSTSPQNSMLLAHQHQQQQSSSSTTTNFLWRNDHQNAMVFNPAHEQVFMPLHGVNSYEVKMEGENLHQGFVHESSYPHNMVFQMQHYSHA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1375 305 MobiDBLite consensus disorder prediction 207 239 - -
Psa2g1375 305 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Psa2g1375 305 CDD SANT 133 178 IPR001005 -
Psa2g1375 305 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 284 - -
Psa2g1375 305 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Psa2g1375 305 SUPERFAMILY Homeodomain-like 128 181 IPR009057 -
Psa2g1375 305 CDD SANT 28 74 IPR001005 -
Psa2g1375 305 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
Psa2g1375 305 Pfam Myb-like DNA-binding domain 27 72 IPR001005 -
Psa2g1375 305 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Psa2g1375 305 Gene3D - 20 88 - -
Psa2g1375 305 SMART sant 25 77 IPR001005 -
Psa2g1375 305 SMART sant 130 180 IPR001005 -
Psa2g1375 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Psa2g1375 305 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
Psa2g1375 305 Gene3D - 132 182 - -
Psa2g1375 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 284 IPR043363 -
Psa2g1375 305 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Psa2g1375 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 129 181 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1375 Psa-Chr2 103951472 103955513 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g1375 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1375 - - gmx:100784163 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1375 2 103951472 103955513 Psa2g1375 2 103951472 103955513 ECH
Psa2g1375 2 103951472 103955513 Psa2g0823 2 50545126 50547796 ECH
Psa5g3731 5 294574147 294577094 Psa2g1375 2 103951472 103955513 ECH