Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1360 ATGAACCCGTTAACACTAGTGAAGCGCATTCAGAAAATCAATTCAAGAGAAGCTGCGTTAGGCATCAGCGAACAAGCTTCGTGGCATACCAAATACAAAGATTCCGCGTATGTTTTTGTTGGTGGCATTCCCTTTGATCTCACGGAGGGTGATCTCCTTGCCGTTTTTGCTCAATATGGGGAGGTTGTTGATGTTAATCTCGTTAGAGACAAAGATACCGGGAAATCGAAGGGTTTTGCGTTCCTTGCATATGAAGATCAAAGAAGCACTAATCTTGCTGTCGATAATCTGAACGGAGCTCAGGTTTTAGGTAGGATTATTAGGGTGGATCATGTTGATAAGTATAAGAAGAAGGAAGAGGAAGATGAAGAGACAGAGCGGCAGAAAAGGGAGGCCCGAGGTGTTTGTCGAGCTTTCCAAAAAGGGGAATGTACTCGGGGAGCTGGATGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAATACTGGTTGGGGTGAGAAGGACAATTCTAAATGGGATAATGACAAATATGACGGTCCCACGAAAGAAAGAAGACATGACATCAACCAATCAAATCGCTTTCCAGAAACTAGAGACAGAGACTCACGCCCAAGAGCCTATAGCAATGCGATGGAATTAGACAACCATTCCAAGCGAAGTGATAGAAGAGAGGAAAAGATGTCGCGGAGGCATAATGACGATGAACTTGATCATCGGTCAAAAGAAGATCAACATAGGAGAGAAGAAAAAAGATCAAGGAATGATTATGACGATAGGGAACCTGAGCCAAGGGATCACAGAAGGTCAATAAAGCGAGATGATGTCGAGTTTGAGCCCAGGTCAAGAGATTCTGATGTAAGAGAAGACAAAAGATTGAGTAGGCAGGATGTTGATGATTTTAGAAGCAAGTCAAAGGAAATGCATGGTAACCGGGAAGAGAGGAGATTAAGAAAACACACTGAAGATGAATCTGTGCCAAGGTCAAGAGAAGATCATGAGAGGAAGCATGGTAACCGGGAGGAGAGGAGATCAAGAAAGCACACTGAAGATGAATCTGTACCAAGGTCAAGAGAAGATCATGATGGGAAGCTAGATAACATATATAGAAATAATACTCATCGATCTGAATCAAAAGGAAGATATGATTCTGACCGAAGAGAAGACAAGAGAAGGTAA 1176 0.426 MNPLTLVKRIQKINSREAALGISEQASWHTKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKDTGKSKGFAFLAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQKGECTRGAGCKFSHDEQRAANTGWGEKDNSKWDNDKYDGPTKERRHDINQSNRFPETRDRDSRPRAYSNAMELDNHSKRSDRREEKMSRRHNDDELDHRSKEDQHRREEKRSRNDYDDREPEPRDHRRSIKRDDVEFEPRSRDSDVREDKRLSRQDVDDFRSKSKEMHGNREERRLRKHTEDESVPRSREDHERKHGNREERRSRKHTEDESVPRSREDHDGKLDNIYRNNTHRSESKGRYDSDRREDKRR* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1360 391 Gene3D - 118 202 - -
Psa2g1360 391 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Psa2g1360 391 MobiDBLite consensus disorder prediction 178 391 - -
Psa2g1360 391 Gene3D - 5 111 IPR012677 -
Psa2g1360 391 Coils Coil 115 135 - -
Psa2g1360 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Psa2g1360 391 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 301 - -
Psa2g1360 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Psa2g1360 391 SMART rrm1_1 37 110 IPR000504 GO:0003723
Psa2g1360 391 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 301 - -
Psa2g1360 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Psa2g1360 391 SUPERFAMILY RNA-binding domain, RBD 25 116 IPR035979 GO:0003676
Psa2g1360 391 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Psa2g1360 391 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Psa2g1360 391 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1360 Psa-Chr2 103327173 103332148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1360 38 84 C2H2 Transcription Factor Family AT2G19380 40.426 1.33e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1360 K13107 - gmx:100792988 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1360 2 103327173 103332148 Psa2g1360 2 103327173 103332148 ECH