Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1349 ATGTCGCACTTCGGAAGATCCGGTCCTCCCGATATCTCCGACACCTACTCTCTACTCGTCCTCAACATCACTTTTCGTACAACCCCCGATGACCTATTTCCTCTCTTTGACAAATACGGCAAAGTTGTTGACATTTTCGTCCCCAAAGATAGAAGGACCGGTGAATCAAGAGGTTTCGCTTTTGTGCGTTACAAGTATGCTGATGAAGCTTCTAAGGCCGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCGAAATATGGCCCTAATGCTGAGAGGATTCAGAAAGGAAGGATTATTGAAACATCCCCAAGATCGAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGCACCGTGATGATTACAAAGGCAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGTATGAACGCGACAGGTACCGCGGTGGGAGAGACAGGGACTATCGTCGCCGAAGCAGAAGCCGTAGTGCCAGTCCTGATCACAAGGGCCGTGGAAGGGGACGCTATGATGATGAGCGCCGTAGTGCCAGTCCTGATTACAAGGGCCGTGGAAGGGGACGCTATGATGATGAGCGCCGTAGTAGAAACCGAAGCAGATCAGTAGAAAGCCGATCCCCTGCCCAACGAAGTCCTAGTCCAATAAGGAGCCCTTCTCCTAAGAAGAGTATTTCCCCTCAAAGGAGTACTTCTCCCCAGAAAAGTCCACGTCATGAAAGTCCTGATAATCGTAGCCGTGATGAAAGGTCTCTTACTCCACGAAGTGTCTCACCACGAGGTCGCCCTGATGTTTCCCCAAGCCCATCTCCTTGA 846 0.5047 MSHFGRSGPPDISDTYSLLVLNITFRTTPDDLFPLFDKYGKVVDIFVPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSRRRHRDDYKGKDYRRRSRSRSYDRYERDRYRGGRDRDYRRRSRSRSASPDHKGRGRGRYDDERRSASPDYKGRGRGRYDDERRSRNRSRSVESRSPAQRSPSPIRSPSPKKSISPQRSTSPQKSPRHESPDNRSRDERSLTPRSVSPRGRPDVSPSPSP* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1349 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Psa2g1349 281 MobiDBLite consensus disorder prediction 122 214 - -
Psa2g1349 281 Gene3D - 4 105 IPR012677 -
Psa2g1349 281 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Psa2g1349 281 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 186 281 - -
Psa2g1349 281 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 189 - -
Psa2g1349 281 MobiDBLite consensus disorder prediction 246 265 - -
Psa2g1349 281 MobiDBLite consensus disorder prediction 100 281 - -
Psa2g1349 281 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 186 281 - -
Psa2g1349 281 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 189 - -
Psa2g1349 281 SMART rrm1_1 17 90 IPR000504 GO:0003723
Psa2g1349 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Psa2g1349 281 SMART rrm2_1 17 90 IPR003954 GO:0003676
Psa2g1349 281 MobiDBLite consensus disorder prediction 215 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1349 Psa-Chr2 102865788 102870789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1349 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 2.62e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1349 K12891 - gmx:100778928 305.449