Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1347 ATGAAAACAATTGGATCACATTTTGGTGCTGGTGATGATATAAAAATGAGCAATCACTCTTCTATAGGTCCTCCTTTGACTGCCATTGATAGATTCTTATGGGGTCAACGCAACCATATCCCTCAAAATATTGATGATGAAAATTGTTATGGCTTTGGTGCTTCAACCTATAGTTACATGTGGCCTAATAATAATATCATAACTCAAGAAGCTAGCTTTGTTGATCATCTAATGGAAGATGAAGAGGTGATGAATTGGACAGAAGAAATTCCTTTAATGAAATTGTTGAAGTTTGTGAAATTATATGGAGTAAGAAAATGGTCTCAAATAGCTGAGAAATTGGAAGGAAGAGTTGGAAAGCAGTGTAGAGAAAGATGGCAAAATCATCTTAAGCCTGATATTAAAAAAGATAGTTGGAGCGAGGAAGAAGAGAAGATACTAGTGGAGTGTCATAGCAAGATGGGAAGCCGATGGGCTGAGATAGCGAAGAAAATTCCAGGAAGAACCGATAATGCAATTAAGAATCATTGGAACGCAACTAAAAGACGACAAAATTCAAAGAGAAATAACAAAAGGCCTCAAATCAAAGATGGTAAACCACAATCTTCTATTCTTCAAGACTATATCAAAAATTTGACTCAAAAACCATCCACTTCAGCAATATTTGAGGACCCTTCCATAGACCAATCTCACCTTGTTTTTTCTAACATGTTTCATGAAAATTTATCATCACCACTTATTGCTGAATCTTATGACGATGAACTACTCTTCATGCAACAACTTTTTAAGGTGAATAATAATTATGAACATGTATTTAACCAATACCATGAGAACCAGTCTAATAGTAACCAGATTCTAAAATGA 864 0.3472 MKTIGSHFGAGDDIKMSNHSSIGPPLTAIDRFLWGQRNHIPQNIDDENCYGFGASTYSYMWPNNNIITQEASFVDHLMEDEEVMNWTEEIPLMKLLKFVKLYGVRKWSQIAEKLEGRVGKQCRERWQNHLKPDIKKDSWSEEEEKILVECHSKMGSRWAEIAKKIPGRTDNAIKNHWNATKRRQNSKRNNKRPQIKDGKPQSSILQDYIKNLTQKPSTSAIFEDPSIDQSHLVFSNMFHENLSSPLIAESYDDELLFMQQLFKVNNNYEHVFNQYHENQSNSNQILK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1347 287 Pfam Myb-like DNA-binding domain 94 130 IPR001005 -
Psa2g1347 287 Pfam Myb-like DNA-binding domain 136 178 IPR001005 -
Psa2g1347 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 185 IPR017930 -
Psa2g1347 287 CDD SANT 138 181 IPR001005 -
Psa2g1347 287 Gene3D - 83 135 - -
Psa2g1347 287 SUPERFAMILY Homeodomain-like 110 189 IPR009057 -
Psa2g1347 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 130 IPR017930 -
Psa2g1347 287 Gene3D - 137 206 - -
Psa2g1347 287 PANTHER MYB DOMAIN PROTEIN 64-RELATED 86 267 - -
Psa2g1347 287 ProSiteProfiles Myb-like domain profile. 95 130 IPR001005 -
Psa2g1347 287 MobiDBLite consensus disorder prediction 179 201 - -
Psa2g1347 287 PANTHER MYB PROTEIN-RELATED 86 267 - -
Psa2g1347 287 CDD SANT 85 130 IPR001005 -
Psa2g1347 287 ProSiteProfiles Myb-like domain profile. 131 181 IPR001005 -
Psa2g1347 287 SMART sant 82 132 IPR001005 -
Psa2g1347 287 SMART sant 135 183 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1347 Psa-Chr2 102723191 102724887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1347 23 262 MYB Transcription Factor Family AT5G58850 38.384 8.61e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g1347 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1347 K09422 - gmx:100786295 296.204