Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1338 ATGGAAGAAAAACAACATATGACAGATCCTGTTGAGGTATTAAGGGAAGATATTTCCATGTGCAGCGGTATGGGGTATGAGAATGAGAATAAAGAAGGGCGGCGTCGGGATGTTTATGATTTGCTTGAATTTTCAGCTGCAGATGATGTGATTGGTTTCAAAGATGCGGTCGAAAACGAGGGTTGTGACGTCGATGAGGTTGGTTTGTGGTATGGAAGAAGGGTTGGTTCGAATAAATTGGGTTATGTAGAGAGGACTCCTCTTATGGTCGCTGCTATGTTTGGAAGCTTGAATGTTTCGGCTTATATTCTTGGAACGGGCCGCGTTGATGTTAATCGGGGTAGTGGATCCGATGGTGCTACTGCTCTTCATTGTGCGGTTGTTGGGGGTTCTGCTGCTTCTGCTGAGATTGTCAAGCTTTTGCTTTATGCATTGGCGGATGCGGGTGCTGTTGATGCCAACGGTAACCGCCCCGTTGACTTGATTGTCTCGGTGGGGAATCGTATCTTTGATTCGAGGAAGAGAATGCTGCTAGTTCTTTTGGAGGGTACCTGCGGGGCTGATCAGACATGTCTTATATTTCCGGAGACAATTGATGGTGTTGATGAATATCAAAGGCAAGATTTAACCTCGCCTCGTTTTTCAAAAGATTATCCTCTTGATCTTTCTCTTCCTGACATAAAGAACGGAATATATAGTACCGATGAGTTTAGGATGTATACGTTCAAAGTGAAGCCTTGCTCAAGGGCATATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCGGGGGAAAATGCAAGGCGGCGCGATCCAAAGAAATATCCTTATAGCTGTGTCCCTTGTCCCGAGTTTCGCAAAGGATCGTGCAGCAAAGGGGATTCGTGTGACTATGCTCATGGTATTTTCGAGTGCTGGCTTCATCCTGCGCAATATCGTACACGTCTTTGCAAGGACGAGAGCTCGTGCACAAGAAGAGTTTGCTTCTTTGCTCACAGAATTGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGCTCTGCTATTCCGTCTCCGAGGTCGTATTACAGTAGTGCTTCTGCATTAGAGATGGGTTCTCTTAGTCCTACCGCGCTCGGTTCTCCGTCTGGTTTGATGCCACCCTCGTCAACACCGCCTTTGACTCCATCTGGTGCGTCTTCTCCTGTTTCTGCAGCAGCCATGTGGCAGACACAGTGTAATGTTCCGGTCCCTACCCTTCAGCTTCCGAGAAGCAGGTTGAATTCGGCAATAACTGCTAGAAACATTGATTCAGATATTGCAAAGCTAAGGATTGAAACTCAGCGGCGAAGCCAGCAACTGATGATGGACGAGATATCCGGTCTTTCCTCACCTTCCAACTGGAAAAATTCCATGCCTAACAGTCCATCTTTTCCGGTTTCTTTGAACGATCATACTACCGGCGAACTAAATAGGTTTTCGGGGATGAAGCCTAATAACCTCGAAGACATTTTCGGATCACGCGATCCACCAATATTGCATAAATTCCATGGAGTCTCACTTGATGCTGCAGGAACTCAGTTACAATCTCCAACTGGAATCCAAATGCGTCCAAATATGAATCAGCAACAGAAAAACTACACTTCCAATGTGATTGGATCACCGACTAGATTTGATCTATCCGGGGAGTTATCTGCAGCAGCTTTGAATTCAAGAGCTGCCGCCTTTTCCAGGCGGAGCCAGAGCTTCATCGAACGCAGCGTGGCCAACCGTCACTCCGAGCTTCTTTCTCCTGTCAATCCTTATGCATTTTCCAACTGGGGATCACCCGGTGGAAAACTGGATTGGACCATACATGGAGAAGAACTTAACAAGCTAAGGAAATCGTCTTCTTTTGGATTTCGAAGCAGCAATACTCCTTTAACACCAACTGCAACTCAAGCATCGGAAAACGACAACGAACCAGACGTCTCTTGGGTTAATTCACTCGTGAAGGACGCTACGCCGCAGGAAACTAGCCGGTTTGGCGATGAAAATCAGAAACGGAAACTGCAAAACAATCTTAACAACGGAACGGACGCAATTCCGGCTTGGTTGGAGCAATTGTACAAGGATCAAGAACAAATGGTGCATTGA 2112 0.4654 MEEKQHMTDPVEVLREDISMCSGMGYENENKEGRRRDVYDLLEFSAADDVIGFKDAVENEGCDVDEVGLWYGRRVGSNKLGYVERTPLMVAAMFGSLNVSAYILGTGRVDVNRGSGSDGATALHCAVVGGSAASAEIVKLLLYALADAGAVDANGNRPVDLIVSVGNRIFDSRKRMLLVLLEGTCGADQTCLIFPETIDGVDEYQRQDLTSPRFSKDYPLDLSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDESSCTRRVCFFAHRIEELRPLYASTGSAIPSPRSYYSSASALEMGSLSPTALGSPSGLMPPSSTPPLTPSGASSPVSAAAMWQTQCNVPVPTLQLPRSRLNSAITARNIDSDIAKLRIETQRRSQQLMMDEISGLSSPSNWKNSMPNSPSFPVSLNDHTTGELNRFSGMKPNNLEDIFGSRDPPILHKFHGVSLDAAGTQLQSPTGIQMRPNMNQQQKNYTSNVIGSPTRFDLSGELSAAALNSRAAAFSRRSQSFIERSVANRHSELLSPVNPYAFSNWGSPGGKLDWTIHGEELNKLRKSSSFGFRSSNTPLTPTATQASENDNEPDVSWVNSLVKDATPQETSRFGDENQKRKLQNNLNNGTDAIPAWLEQLYKDQEQMVH* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1338 703 MobiDBLite consensus disorder prediction 622 647 - -
Psa2g1338 703 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 27 702 - -
Psa2g1338 703 SMART c3hfinal6 276 302 IPR000571 GO:0046872
Psa2g1338 703 SMART c3hfinal6 311 334 IPR000571 GO:0046872
Psa2g1338 703 Gene3D - 30 122 IPR036770 -
Psa2g1338 703 MobiDBLite consensus disorder prediction 371 394 - -
Psa2g1338 703 SMART ANK_2a 83 113 IPR002110 GO:0005515
Psa2g1338 703 SMART ANK_2a 118 150 IPR002110 GO:0005515
Psa2g1338 703 Pfam Ankyrin repeats (3 copies) 78 148 IPR002110 GO:0005515
Psa2g1338 703 SUPERFAMILY Ankyrin repeat 72 167 IPR036770 -
Psa2g1338 703 PANTHER UNKEMPT FAMILY MEMBER 27 702 IPR045234 -
Psa2g1338 703 ProSiteProfiles Ankyrin repeat region circular profile. 118 152 - -
Psa2g1338 703 ProSiteProfiles Ankyrin repeat profile. 118 153 IPR002110 GO:0005515
Psa2g1338 703 Gene3D - 276 339 - -
Psa2g1338 703 Gene3D - 123 181 IPR036770 -
Psa2g1338 703 ProSiteProfiles Zinc finger C3H1-type profile. 276 303 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1338 Psa-Chr2 102112754 102115434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1338 41 698 C2H2 Transcription Factor Family AT5G12850 38.366 4.81e-138 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa2g1338 Ank_2 1.6e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1338 - - aprc:113846970 959.903