Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1320 ATGGAGACGAGCATCCTAGGGTTGGCTTCTTTCCCTTGCTACACAACACCAAACCGTTCTCTTCCAAAGCTTCGGATACTATCTATGCGACATCAATATCCCCTTGCAAGCAAAATCGTTGTTAAAAATTTACCTTACTTTACTCGTGAGAATACTTTGCAAACGGAATTTTCTAATTTTGGCAAGATAGCTGAAGTTAATATGGTAAAAGATGCGATCACAGGAAGATCGAAGGGATTTGCTTTTATTCAATACACAAGTCAGGACGATGCCATGCTTGCACTAGAAAACATGGATCAAAAGAATTTTCACGGCCGGACAATCTCTGTAAATCTTGTAAAACTTGATCCTTATGAATTGTGTGAACCCCCGCCAAGGGCCACAGGGCCACCAAAGAAGTGTAATTTACCAAAACCAAGGGCCTCAGGGTCACCAAAGAAGTGTAATTTACCGGAACCAAGGAAGTGGAATTTACCTAAAGAGTATGTAGAAGATGTAGATTGCTGGTACTGA 513 0.4113 METSILGLASFPCYTTPNRSLPKLRILSMRHQYPLASKIVVKNLPYFTRENTLQTEFSNFGKIAEVNMVKDAITGRSKGFAFIQYTSQDDAMLALENMDQKNFHGRTISVNLVKLDPYELCEPPPRATGPPKKCNLPKPRASGSPKKCNLPEPRKWNLPKEYVEDVDCWY* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1320 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Psa2g1320 170 SUPERFAMILY RNA-binding domain, RBD 25 118 IPR035979 GO:0003676
Psa2g1320 170 Gene3D - 27 112 IPR012677 -
Psa2g1320 170 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 19 141 - -
Psa2g1320 170 SMART rrm1_1 38 111 IPR000504 GO:0003723
Psa2g1320 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Psa2g1320 170 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 19 141 - -
Psa2g1320 170 CDD RRM_SF 39 111 - -
Psa2g1320 170 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1320 Psa-Chr2 100030736 100032396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1320 4 99 Eukaryotic Initiation Factors Gene Family AT4G34110 32.292 1.90e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1320 - - gmx:100305971 162.54