Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1302 ATGAATAAGGCTAATTCATGGGTGAGAGGAAAGTGTATCGGTAAGGGCGCGTTTGGCGTCGTGAATATGGCTTATTCAAAAAGCGATTCTAGAGTTTTCGCGGTGAAGTCTGTTGATACTAAAACTGCGCTTCCGAATCAGTTACAAGCGTTGGAGAATGAGATTGCGATATTGAAACGGTTATCTTCTTCTTCTTCTTCTCCGCACGTGGTATCTTATCTCGGCGATGACGTCACGTGCGAGGGTGAAGGAACGTCGTCGTTTAAGAATCTTCACTTGGAGTACATGCCAGGTGGCACCGTCGCTGATTTGGATCGCGCTGACGTGGACGAACGGTTAGTTAGAAAGTTCGCGTGGTGTTTGGTTAACGCGCTGAGGGATGTTCACGCGCGTGGAGTTGTTCACTGCGATGTTAAGGGGAAGAATGTTCTCGTTGCCGGAGGTTCATGCTCCGTCGCTAAGCTCGCTGATTTCGGATCGGCGGTGGAGTTTTCCGGTGGGAGATGTTTTTCGCCTCGTGGAAGCCCGTTGTGGATGGCACCGGAGGTGATTCGGAGGGAGTATCAAGGACCGGAATCTGACGTGTGGTCGCTTGGATGCACGGTGATTGAGATTTTCTCCGGGAAGTCACCGTGGGAGGATCAAGGCTTCGATACTCTGAATCAAATTGGATTTTCCGATGAATTACCGGAGTTTCCTAACGGTTTATCGGAAATCGGGATCGATTTTCTCGAGAAGTGTTTGAGGAGAGACCGGAGCCGGAGATGGAGCTGTGATCAGCTGCTACAGCATCCATTTCTGTTACCGTGCGATAGTGTGGTAGAATCGTCACCTCGTTCTGTCATGGACTGGGTTGACTCGCGATTCACCGAGTCAGAAAACGAGTTCGAGTTCGAATTCGAAGAAGTAAAGTTGAATTGTGATACAAATTTAGCTAAAAATAGAATTAGTAAATTAGAGAGTGGATTGAGGGTAAATTGGGAAACAGAAAATTGGGTAGTGGTGAGGGAAATTTCGTCAGAAGAAGAGTCATCACCAACAGAAAAAGAAGAGTGTGGGGACGAAGTATCAGGGGCAATATCGGAATTGGAGAATGTAATGAGGGTAGTAGAGGAAATGGAGGTAGAAGTAGAAACTAGTTTGGAATATTCAAATTCTGATGAAAGGGTAAAATGGGAAATGTTGAGGTTGTTGTGGTGGCGTGAGTGTTATAATCAGTGCAAGTACAACTGCAACCGCAGGAACAGCATTATAGGTGGAAGTGGAAGTTGTTGTGGTTGGAGATGTCGGTATAGATACGGTTGGGAAAAGTTTGATAGGAATATTTGTAGAATATTCATTATTTACACACTGTGTTGTAAAATAATCAAATCATTTTATTTGTTATTAATATATTATTATTCTTTTTGGTTAAAAATGTTATTGAATTGTTGGTGTTTGAAATTGAGATTCAAGTTGAAAATTATTAAGGGTGTATATATTTTAAATTTTAGTAGAAATAATTTTGAAACTTTTTTTACTCAAACAAATTTTGAAAATTAA 1542 0.4241 MNKANSWVRGKCIGKGAFGVVNMAYSKSDSRVFAVKSVDTKTALPNQLQALENEIAILKRLSSSSSSPHVVSYLGDDVTCEGEGTSSFKNLHLEYMPGGTVADLDRADVDERLVRKFAWCLVNALRDVHARGVVHCDVKGKNVLVAGGSCSVAKLADFGSAVEFSGGRCFSPRGSPLWMAPEVIRREYQGPESDVWSLGCTVIEIFSGKSPWEDQGFDTLNQIGFSDELPEFPNGLSEIGIDFLEKCLRRDRSRRWSCDQLLQHPFLLPCDSVVESSPRSVMDWVDSRFTESENEFEFEFEEVKLNCDTNLAKNRISKLESGLRVNWETENWVVVREISSEEESSPTEKEECGDEVSGAISELENVMRVVEEMEVEVETSLEYSNSDERVKWEMLRLLWWRECYNQCKYNCNRRNSIIGGSGSCCGWRCRYRYGWEKFDRNICRIFIIYTLCCKIIKSFYLLLIYYYSFWLKMLLNCWCLKLRFKLKIIKGVYILNFSRNNFETFFTQTNFEN* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1302 513 SMART serkin_6 7 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g1302 513 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 365 - -
Psa2g1302 513 Pfam Protein kinase domain 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g1302 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Psa2g1302 513 CDD STKc_MAPKKK 6 267 - -
Psa2g1302 513 Gene3D Transferase(Phosphotransferase) domain 1 2 340 - -
Psa2g1302 513 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 365 - -
Psa2g1302 513 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Psa2g1302 513 ProSiteProfiles Protein kinase domain profile. 7 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g1302 513 ProSitePatterns Protein kinases ATP-binding region signature. 13 36 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1302 Psa-Chr2 98780703 98783193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1302 7 344 MAP Kinase Kinase Kinase AT2G30040 59.064 5.96e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa2g1302 Pkinase 8.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1302 - - mtr:MTR_5g071560 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1302 2 98780703 98783193 Psa2g1302 2 98780703 98783193 ECH