Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1296 ATGCTGAGCCAGCACGATTCAGTAAACTCGTCCACCAACACACTGAGTCAACTAGCTCAGAACATGTTTTCCGACGAAAACAACAGCAACAACATCATCATGCTTGCAGCCATTGTTTCTCTCTTCCTAGTAATCCTCTTCGTCCTCCTTCTCCATGTCTACGCCAAATGCTTCCTAGCTCAGTCCAACTCACAGTCAAATCCTCACCGCCGGCAGCCTCCGGTGTCCGACGTTCTAACTCCTTCCAACTTTCACCACCATTTCAACACCGAAGCCCCACCCTTTACCGGACTCGACCCAACAACAGTTTCGAAGATTCCCACGTTTGTGTCGGAACATAAAACAGAGGAATTAGAATGTGTGATATGTTTGAGTTATATTGAAAAGGGAGAGGTTGGAAGAAAGTTACCAAAATGTGGACACGCTTTTCATGTTGAATGCATTGACATGTGGTTGAATTCACATAGCAATTGTCCACTATGTAGATCTTTGGTTGTTGACGATGATTCTCATGGTGGTGGTGTTGAGATTGTTATTGATAGTCCAAGAAGTTATGAGATTAGTGAAAATGGTTCTGTTTCTGTATCAGAAACTTCTTTGTCTTTGTTTGGTTTTTCTTTCAAGAGAATTATTAGCAAAGTTTTTCTTTCTTCCCATGTAAATGAATTAGAACATGGTTCACACTAA 687 0.4163 MLSQHDSVNSSTNTLSQLAQNMFSDENNSNNIIMLAAIVSLFLVILFVLLLHVYAKCFLAQSNSQSNPHRRQPPVSDVLTPSNFHHHFNTEAPPFTGLDPTTVSKIPTFVSEHKTEELECVICLSYIEKGEVGRKLPKCGHAFHVECIDMWLNSHSNCPLCRSLVVDDDSHGGGVEIVIDSPRSYEISENGSVSVSETSLSLFGFSFKRIISKVFLSSHVNELEHGSH* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1296 228 SMART ring_2 120 161 IPR001841 -
Psa2g1296 228 CDD RING-H2_EL5_like 119 162 - -
Psa2g1296 228 Pfam Ring finger domain 119 162 IPR001841 -
Psa2g1296 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 166 IPR013083 -
Psa2g1296 228 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 220 IPR044675 -
Psa2g1296 228 PANTHER - 8 220 - -
Psa2g1296 228 SUPERFAMILY RING/U-box 109 168 - -
Psa2g1296 228 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1296 Psa-Chr2 98100375 98101061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1296 33 165 Rapid Response to Elicitors AT3G16720 41.481 8.06e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1296 - - cam:101493591 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1296 2 98100375 98101061 Psa2g1296 2 98100375 98101061 ECH