Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1263 ATGCTTTCAGGGGACATACCTCCAAATCAAACCATTTACGTTAAGAATCTCAATGAAAAGGTCAAGAAAGATGAGTTGAAGAGATCTCTGTACTGCTTATTCTCTCAATATGGAAGGATTTTGGACATCATTGCTCTAAAGACTCCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTAACTGCTGCTAGTAATGCAGTGCGACAGATGCAGAACTTCCCATTTTATGAAAAACCCATGAGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTTTGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGTTGAGAAAAAGAGGTTCCCTGAGGAATCAAAACAATCTTCCGTGCCAAATGGAACACATGGTGCAAGTAATGGTGGCCCAACAGCCTCATTCCGTCCAGGGTCTACTTCCCAAGAAGCAGCTGCTCCTAACGATATTTTGTTCATAGAGAACTTGCCTTATGAAACTACCGGCAGAATGCTTGAAATGCTCTTCGAACAATACCCTGGGTTTAAGGAAGTGCGCTTGATTGATGCAAAGCCAGGTATCGCATTCGTAGATTTTGAAGATGACATACAATCATCTATGGCAATGCAGGCTCTTCAAGGCTTCAAAATCACACCTCAAAATCCCATGGTTATAAACTTTGCTAAGAAGTAA 699 0.4049 MLSGDIPPNQTIYVKNLNEKVKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKVEKKRFPEESKQSSVPNGTHGASNGGPTASFRPGSTSQEAAAPNDILFIENLPYETTGRMLEMLFEQYPGFKEVRLIDAKPGIAFVDFEDDIQSSMAMQALQGFKITPQNPMVINFAKK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1263 232 CDD RRM1_U1A_like 11 88 - -
Psa2g1263 232 Gene3D - 4 114 IPR012677 -
Psa2g1263 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Psa2g1263 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Psa2g1263 232 SUPERFAMILY RNA-binding domain, RBD 8 223 IPR035979 GO:0003676
Psa2g1263 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Psa2g1263 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Psa2g1263 232 MobiDBLite consensus disorder prediction 104 123 - -
Psa2g1263 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Psa2g1263 232 CDD RRM2_U1A_like 156 227 - -
Psa2g1263 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 4 232 - -
Psa2g1263 232 MobiDBLite consensus disorder prediction 124 139 - -
Psa2g1263 232 MobiDBLite consensus disorder prediction 104 139 - -
Psa2g1263 232 Gene3D - 147 232 IPR012677 -
Psa2g1263 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Psa2g1263 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 4 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1263 Psa-Chr2 96671930 96678572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1263 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 22.881 8.59e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1263 K11094 - gmx:100805822 414.461