Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1260 ATGGCGTCTTCATCTAGTAATTTAAATACCAATAATAATATTAATAATGGTTTGAACTCATTCAACCATTTTTCCTTCTCAACTCAACCTTTCATGACGACCAGTTCTTTCTCTGACCTTTTAGCTTCCCCTCTTGATGAGAATGAGAACAATAACAACAACAACAACTTAAGAAATGATTATGGTGTTCCTAAGTTCAAGTCTACACCACCTCCTTCTTTGCCTTTGTCACCACCTTTGGTTTCTCCTTCTTCCTATTTTTCAGTTCCTCCTGGTTTGAGTCCGGCTGAACTACTTGATTCGCCTGTTTTGTTGAACTCTAACAATGTTTTGCCGTCTCCTACAACTGGTGCTTTTGCTGCTCATAGCTACAATTGGAAGAACAATTCTGAGGGGAATCAACAACTTGCAAATTTCTCTTTTCAGACCCAACAACATCATGCTGTTTCTGCATCCAACACATCTTTTCAATCATCAAACGTTGGAATTCAACAACAACAGCCATGGAGTTATCAAGAAAGCACAAAACAAGAAGGCTATTCATCTGGAAACAACATGATGCAAGGTGAAAACAACAACACTTCTATGCAGATTTATTCTCCGGAGTTTGCTAATATTTATTCTCCGGAGTTTGCTAATGTTCAAATGAACACCACCATGATGAACAACAATGGAGTTCAATCTGATTACAACAATTACCAAGCAGTACCACTGCAACAAGTTCAAACCTTGAGTAAGAAATCAGACGACGGATACAATTGGAGAAAGTACGGACAAAAACAAGTGAAAGGAAGTGAGAATCCGAGAAGCTATTACAAATGCACGTACCCGAATTGTCCAACGAAGAAGAAAGTTGAGAGATCCGTCGAGGGACAGATTACTGAGATCGTTTATAAGGGTACTCATAATCATCCTAAGCCTCAATCTACTAGGAAAAACTCGTCGAATGCTCTTGTGATTGTTCCTGCTAATCCAAATGGCAATGAAATCATTGATCAGTCATATGGATCATATGGTAATGGACAAATGGATTCTGGTGCTACTCCTGAGAATTCATCAATATCAATCGGCGGAGATGATGATTTTGAACAGAGTTCTCATCAAAAGACTAGATCTGGCGGCGGTGATGAATATGATGATGAGGAGCCTGATACTAAAAGATGGAAAAATGAAGGTGAAAATGAGGGAATATCAGCACCTGGAAGCAGAACAGTGAGAGAACCTAGAGTTGTTGTTCAGACAACAAGTGACATTGATATTCTGGATGATGGTTACAGATGGAGGAAATATGGACAGAAAGTTGTTAAGGGAAATCCAAATCCAAGGAGCTACTACAAATGTACACACCCAGGTTGTCCAGTGAGGAAACATGTTGAGCGGGCATCGCATGATTTGCGGGCTGTGATCACAACATATGAAGGAAAGCACAACCATGATGTCCCTGCTGCTCGCGGAAGCGGGAGCAACTCCCTAAACCGACCAACGGCAAGCAACCCTTCAAATCCAAACAATGCTGCTGCTGCCTCCGTAATGCCACTACATATTCAAAGGCCACAACAACCAGCACAGCAGGTCCAATCCCGTCCTTTCAACTTAGACATGCTGCAGCCTCAAGGAAGCTACGGATTTTCAAGGTTTTTGAATCCAATGGAGTCTTACATGAATCCGCAACAACAACCGCTACAGCATCAACATCAGCAGCAGCAACAGCATCAGCATCAACAACAGCAAATGTCTGACAATGGTTTTTCCTCTAGAGCTAAGGAGGAACCTAAAGATGACATGTTTCTGGAGTCATTGCTATGCTGA 1809 0.414 MASSSSNLNTNNNINNGLNSFNHFSFSTQPFMTTSSFSDLLASPLDENENNNNNNNLRNDYGVPKFKSTPPPSLPLSPPLVSPSSYFSVPPGLSPAELLDSPVLLNSNNVLPSPTTGAFAAHSYNWKNNSEGNQQLANFSFQTQQHHAVSASNTSFQSSNVGIQQQQPWSYQESTKQEGYSSGNNMMQGENNNTSMQIYSPEFANIYSPEFANVQMNTTMMNNNGVQSDYNNYQAVPLQQVQTLSKKSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSVEGQITEIVYKGTHNHPKPQSTRKNSSNALVIVPANPNGNEIIDQSYGSYGNGQMDSGATPENSSISIGGDDDFEQSSHQKTRSGGGDEYDDEEPDTKRWKNEGENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNSLNRPTASNPSNPNNAAAASVMPLHIQRPQQPAQQVQSRPFNLDMLQPQGSYGFSRFLNPMESYMNPQQQPLQHQHQQQQQHQHQQQQMSDNGFSSRAKEEPKDDMFLESLLC* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1260 602 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 560 IPR044810 GO:0003700
Psa2g1260 602 SMART WRKY_cls 421 480 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g1260 602 SMART WRKY_cls 248 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g1260 602 ProSiteProfiles WRKY domain profile. 249 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g1260 602 MobiDBLite consensus disorder prediction 550 602 - -
Psa2g1260 602 Gene3D WRKY domain 235 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa2g1260 602 MobiDBLite consensus disorder prediction 473 501 - -
Psa2g1260 602 MobiDBLite consensus disorder prediction 358 406 - -
Psa2g1260 602 SUPERFAMILY WRKY DNA-binding domain 413 481 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa2g1260 602 MobiDBLite consensus disorder prediction 362 393 - -
Psa2g1260 602 MobiDBLite consensus disorder prediction 550 584 - -
Psa2g1260 602 Gene3D WRKY domain 408 474 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa2g1260 602 ProSiteProfiles WRKY domain profile. 416 481 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g1260 602 MobiDBLite consensus disorder prediction 483 501 - -
Psa2g1260 602 SUPERFAMILY WRKY DNA-binding domain 247 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa2g1260 602 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 59 560 - -
Psa2g1260 602 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa2g1260 602 Pfam WRKY DNA -binding domain 422 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1260 Psa-Chr2 96524163 96527436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1260 246 535 WRKY Transcription Factor Family AT2G38470 60.131 1.71e-106 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa2g1260 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1260 K13424 - gmx:100127385 744.191