Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1207 ATGTTTGGATGTCAAGAGACAGAAAGACTAGACGATATAGCAAAGATCAACTTATCATCAGAGGGAGAAGCATCTTCTCAAATGGGAAGGAAGAATTTTTATGGTCCAACTTCTGGGACAACCTTAAACACAGTAACCCCTTGTGCTGCATGTAAGCTTTTGAGAAGAAGATGCGCTGAGGAATGTCCTTTCTCTCCTTATTTTTCACCTCATGAGCCTCAAAAATTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGCAATGTCTCAAAGTTGCTATTGGAGGTACCTGAAGGACAAAGAGCAGATGCAGCAAATAGTATGGTTTATGAAGCAAATTTAAGGTTAAGAGATCCTGTATATGGATGCATGGGTGCAATATCATCGTTACAACAGCAAGTTCAATCATTACAAGCAGAACTACATGCAGTTAGAACTGAGATACTAAAGTACAAATATAGAGAAGCTGCTAGTAACTTTATTTCCTCTCAAGTACCAATGCCTACAAATGCAAACTCACAACAAGATCTTTCTCAACCTCTTGTTCTTCCAACTTTAGCTCCTCCATCTCCTGCTCTTCCTCCACCGCAAAAGGCATCGGCTTCTCAATCGATTATCCTTTCGTCGTTTTCTTCGTCTTCCGGTTCTTCTGTTTACACTCCAGCTAAATCAACAATGAGTCATGGATCTATCTCTAGTGAAAATATTCCTTACTTTGTTTAG 720 0.3958 MFGCQETERLDDIAKINLSSEGEASSQMGRKNFYGPTSGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISSLQQQVQSLQAELHAVRTEILKYKYREAASNFISSQVPMPTNANSQQDLSQPLVLPTLAPPSPALPPPQKASASQSIILSSFSSSSGSSVYTPAKSTMSHGSISSENIPYFV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1207 239 Pfam Lateral organ boundaries (LOB) domain 47 144 IPR004883 -
Psa2g1207 239 PANTHER LOB DOMAIN PROTEIN 32 238 - -
Psa2g1207 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 238 - -
Psa2g1207 239 ProSiteProfiles LOB domain profile. 46 147 IPR004883 -
Psa2g1207 239 Coils Coil 126 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1207 Psa-Chr2 91918466 91920468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1207 28 157 AS2 family AT2G30340 78.462 4.08e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa2g1207 LOB 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1207 - - ccaj:109795340 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1207 2 91918466 91920468 Psa2g1207 2 91918466 91920468 ECH