Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1189 ATGGCAGCGATTTATAGTCTTTACATCATCAATAAGTCTGGTGGATTGATCTACTATAAGGATTATGGGTCAGCTGGACGAATGGATACCAATGATACCTTACGAGTTGCTAGCTTATGGCATTCAATGCATGCCATCTCTCAGCAGTTATCACCCGTGTCAGGTTGTTCAGGAATTGAACTACTCCAAGCTGACACATTTGATCTCCATTGCTTCCAATCACTAACAGGGACAAAGTTTTTTGCAGTATGTGAGCCTGGCATTCAACAAATAGAAAGTTTATTGAAATTTGTATATGAATTGTATACGGACTATGTTTTGAAGAACCCCTTCTATGAGATAGAGATGCCTATTCGATATAAACTTTTTAAGATTCAAATATATGAGATGAGATTCATCATTTCCTGCCATGTTTTTCCCATACAAACGAGGCATTTTCATGGGGTCACTGCCAACTCCGGCGGTTGGCAGAATGGTCATGCCACTTTCTATGGCGGCGGTGATGCTGCTGCCACAATGGGAGGTGCATGTGGTTATGGAAATTTGCATAATCAAGGATATGGAACTAACACTGCAGCACTAAGCACAGCTTTGTTCAACAATGGTTTGAGCTGTGGGGCATGTTATGAAATGAAGTGTGTTGGTGAGTCAAGATGGTGCAAGGCTAGCACTATTGTTGTTACTGCCACAAACTTTTGTCCACCAAATAGTAATGGTGGTTGGTGTAATCCTCCTCTGCAACATTTTGATATGGCAGAACCAGCATTCCTACAAATTGCTCAATATAAAGCTGGAATTGTGCCTATAGCTTTTAGAAGAATGTCATGTATAAAAAAGGGAGGAATAAGGTTCACAATCAATGGCCACTCTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGAGATCTCCATGCAGTGTCAATCCAAGGGTCCAAAATTAGGTGGCAACCAATGTCAAGAAATTGGGGCCAAAATTGGCAGAGCAATTCTTATCTCAATGGACAAAGCCTCTCTTTTAAAGTTACCAATGGTGACGGTAGAACTGTGACAAGCTACAACGTGGCACCAGCTAATTGGCAATTTGGTCAGACCTTTCAAGGGGGTCAGTTTTAG 1122 0.4171 MAAIYSLYIINKSGGLIYYKDYGSAGRMDTNDTLRVASLWHSMHAISQQLSPVSGCSGIELLQADTFDLHCFQSLTGTKFFAVCEPGIQQIESLLKFVYELYTDYVLKNPFYEIEMPIRYKLFKIQIYEMRFIISCHVFPIQTRHFHGVTANSGGWQNGHATFYGGGDAAATMGGACGYGNLHNQGYGTNTAALSTALFNNGLSCGACYEMKCVGESRWCKASTIVVTATNFCPPNSNGGWCNPPLQHFDMAEPAFLQIAQYKAGIVPIAFRRMSCIKKGGIRFTINGHSYFNLVLITNVAGAGDLHAVSIQGSKIRWQPMSRNWGQNWQSNSYLNGQSLSFKVTNGDGRTVTSYNVAPANWQFGQTFQGGQF* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1189 373 SMART Sybindin_2 4 133 IPR007233 GO:0016192|GO:0030008
Psa2g1189 373 SUPERFAMILY SNARE-like 1 129 IPR011012 -
Psa2g1189 373 Pfam Expansin C-terminal domain 282 359 IPR007117 -
Psa2g1189 373 Gene3D - 2 131 - -
Psa2g1189 373 Gene3D - 142 276 IPR036908 -
Psa2g1189 373 PRINTS Expansin/Lol pI family signature 155 170 IPR007118 GO:0005576
Psa2g1189 373 PRINTS Expansin/Lol pI family signature 173 191 IPR007118 GO:0005576
Psa2g1189 373 PRINTS Expansin/Lol pI family signature 195 213 IPR007118 GO:0005576
Psa2g1189 373 PRINTS Expansin/Lol pI family signature 264 280 IPR007118 GO:0005576
Psa2g1189 373 PRINTS Expansin/Lol pI family signature 318 332 IPR007118 GO:0005576
Psa2g1189 373 PRINTS Expansin/Lol pI family signature 356 370 IPR007118 GO:0005576
Psa2g1189 373 PRINTS Expansin signature 186 200 IPR002963 GO:0009664
Psa2g1189 373 PRINTS Expansin signature 213 224 IPR002963 GO:0009664
Psa2g1189 373 PRINTS Expansin signature 225 235 IPR002963 GO:0009664
Psa2g1189 373 PRINTS Expansin signature 239 256 IPR002963 GO:0009664
Psa2g1189 373 PRINTS Expansin signature 256 269 IPR002963 GO:0009664
Psa2g1189 373 PRINTS Expansin signature 280 292 IPR002963 GO:0009664
Psa2g1189 373 PRINTS Expansin signature 292 313 IPR002963 GO:0009664
Psa2g1189 373 PRINTS Expansin signature 327 348 IPR002963 GO:0009664
Psa2g1189 373 PRINTS Expansin signature 356 372 IPR002963 GO:0009664
Psa2g1189 373 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 174 281 IPR007112 -
Psa2g1189 373 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 291 370 IPR007117 -
Psa2g1189 373 PANTHER EXPANSIN-A15 143 373 IPR002963 GO:0009664
Psa2g1189 373 PANTHER EXPANSIN 143 373 - -
Psa2g1189 373 Gene3D - 281 373 IPR036749 -
Psa2g1189 373 Pfam Sybindin-like family 4 129 IPR007233 GO:0016192|GO:0030008
Psa2g1189 373 Pfam Lytic transglycolase 191 270 IPR009009 -
Psa2g1189 373 SUPERFAMILY PHL pollen allergen 278 370 IPR036749 -
Psa2g1189 373 CDD TRAPPC4_synbindin 5 127 - -
Psa2g1189 373 SUPERFAMILY Barwin-like endoglucanases 155 299 IPR036908 -
Psa2g1189 373 SMART dpbb_1 191 271 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1189 Psa-Chr2 89967769 89976058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1189 127 373 Expansin Gene Family AT2G40610 72.332 6.40e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1189 - - gmx:100815150 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1189 2 89967769 89976058 Psa2g1189 2 89967769 89976058 ECH
Psa5g3481 5 270920662 270922944 Psa2g1189 2 89967769 89976058 ECH
Psa5g3481 5 270920662 270922944 Psa2g1189 2 89967769 89976058 PCT