Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1183 ATGGGGGTTGAAGTTTGCATGAATAGACTGTGTAAGGATGGTTCGAGTGGTGAATGGAAGAAAGGGTGGTCTTTGATGTCCGGTGGATTCGCAAAACTCTGCAACAAGTGCGGACTTGCCTATGAGAATTCAGTTTTCTGTGATGTATTCCACCGTCACGAAGCCGGTTGGAGGGAATGCAGCAATTGCAACAAGCCGATCCACTGTGGATGTATAGTATCAAGGTCTTTGTTCGAGTGCCTTGATTACGGTGGTATAGGCTGTATTAGTTGCATCAAGATTTCCCATTTTTGTCCGGATACTGAAAAATCTAATAGGTTCACTCTATCGACCAAAAACAATGCGAGTGATCGATATGCTGAACGTGCTGGCAAAGGAAACCTTTTGCAGTTGTGTAGAAGTGCTGAAGTTGGTGAGTCAAGCCGTTGGCCACACGCTCAAAGAGACGGCAAGGTTTCATGCAATGGTCCAAAAAGCGGAGAAGTTAAGTGTCGATTCAACAAAGAGGATCGAGGATACTTAAATGTGACGAAACATTCTAGTCATTTATCGAGGCTTACTACATCGGAAAGTAATCGACCAACATGGGAGACTAAAAATAATATAGATGAACTACTTTCGCTCAAGATTTCTCTTTTTCAGCAAGAGCAAAAATCTCACCCTTTATTGGCTAAACAGACGAAGAATGGGGTTTCCATGAATGTTGAAGCAAATAAAGGTTTGATTTCTCATGAACGCGTTGGCCGGCCACATGCTGATCTGAAAGGAAAAAGTCAGTTACTTTCTCGATACTGGCCAAGGATTAGTAATCAAGAATTGGAGAAGTTGTCTGGAGATTTGAAGTCTACTATAGTGCCCTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATCGGCCGCCTTGTTCTCCCAAAAGCGTGTGCTGAGGCTTTTCTTCCTCCTATTTCGCAATCGGAAGGTGTTCCATTACAGTTCCAAGATTTGAAGGGGAACGAGTGGACTTTTCAGTTCCGGTTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGCGTGATTCCTTGCATACAGTCGTTGCAATTAAACGCCGGTGATACTGTGACATTTAGTCGGATAGAACCTGGAGAAAAATTTGTACTCGGTTTTAGAAGGGCTACGAATTCTATTGATACACAGGATGCCTCTGCATCAGCTCATTCAAACGGAGTTTTGTCGAAGGATACAAATTTTTCTGGTGCAACTAAGATTCTGAACTCGTTAGGTAGTTTCTCTGATCTTTTTCAAAAAATGAAAGGTAACGGGGAACCGAACTTAAATGGACATTCAGAACGTCTGCGTTTGGGTAATGGAAGTTATGATTGGCTTAAAACCTCACATAAGGAGGCGGTGATAAACAGCGATCCATTGCAACAACTGGTTTCTGTTTCAGAAAAGAAACGGACTCGTAATATTGGGCCGAAAACTAAGAGGTTGCACATTCGTAGTGAAGATTCTATAGAGTTGAGACTTACATGGGAAGAAGCACAAGACTTTCTTTGTCCTCCGCCATTTGTCAAGCCAAATCTCGTGACAATCGAGGACCAAATATTCGAAGAATATGATGAACCACCGGTGTTTGGGAGGAGAACTATAACCAATACTTGTCAATCTTCTGCATCAGAGCAGCTCAGTCCAAAGGAAAAAGAAAATCTTCCGCGAACCAGAAAAGTTTCTAAAAAGAGAAAAACTGGCGAAAAGAGTAAGTCATTTGAACTCGACAACCTTTCAAGCCTAGAAGCTCTTGCAAGCGCAGCAATTTTCGGAGACAATCATGCTGAACTCGGAGAATCATCATCAGCCGGAGCCACCACCAAACATCCGAGGCATCGTCCTGGATGCAGTTGCATCGTATGCAATCAACCACCAAGCGGACAAGGAAAACATAAGCCAACATGCACTTGCGTCCCCTGCGAGACTGTGAAGCGCCGGTTCAATACCTATATGATGCGTAGGAAGAAAAACCGATCAGAATCTTCTGAAGCAGCTGCTTTCCAAAACGATCAAATGAATCGTATAGACGAAGCAGATACAAGTAGCAGTGCATCAGGACAAGATACAAGCCACTCATCGGACGAAGGAAGCCTAAATGAAGATCAGCTCGAGGCCATTGAGCCGAATGCGGCGGGACAGTTAGATCTGAATTGTCATCCGAATCACGACGATATGGAAACGGATACATATAACAAGCCAGATTATGACTAA 2250 0.4338 MGVEVCMNRLCKDGSSGEWKKGWSLMSGGFAKLCNKCGLAYENSVFCDVFHRHEAGWRECSNCNKPIHCGCIVSRSLFECLDYGGIGCISCIKISHFCPDTEKSNRFTLSTKNNASDRYAERAGKGNLLQLCRSAEVGESSRWPHAQRDGKVSCNGPKSGEVKCRFNKEDRGYLNVTKHSSHLSRLTTSESNRPTWETKNNIDELLSLKISLFQQEQKSHPLLAKQTKNGVSMNVEANKGLISHERVGRPHADLKGKSQLLSRYWPRISNQELEKLSGDLKSTIVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPPISQSEGVPLQFQDLKGNEWTFQFRFWPNNNSRMYVLEGVIPCIQSLQLNAGDTVTFSRIEPGEKFVLGFRRATNSIDTQDASASAHSNGVLSKDTNFSGATKILNSLGSFSDLFQKMKGNGEPNLNGHSERLRLGNGSYDWLKTSHKEAVINSDPLQQLVSVSEKKRTRNIGPKTKRLHIRSEDSIELRLTWEEAQDFLCPPPFVKPNLVTIEDQIFEEYDEPPVFGRRTITNTCQSSASEQLSPKEKENLPRTRKVSKKRKTGEKSKSFELDNLSSLEALASAAIFGDNHAELGESSSAGATTKHPRHRPGCSCIVCNQPPSGQGKHKPTCTCVPCETVKRRFNTYMMRRKKNRSESSEAAAFQNDQMNRIDEADTSSSASGQDTSHSSDEGSLNEDQLEAIEPNAAGQLDLNCHPNHDDMETDTYNKPDYD* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1183 749 MobiDBLite consensus disorder prediction 666 749 - -
Psa2g1183 749 CDD B3_DNA 286 387 IPR003340 GO:0003677
Psa2g1183 749 Gene3D - 266 393 IPR015300 -
Psa2g1183 749 ProSiteProfiles B3 DNA-binding domain profile. 288 389 IPR003340 GO:0003677
Psa2g1183 749 MobiDBLite consensus disorder prediction 550 585 - -
Psa2g1183 749 MobiDBLite consensus disorder prediction 675 706 - -
Psa2g1183 749 SMART B3_2 288 389 IPR003340 GO:0003677
Psa2g1183 749 MobiDBLite consensus disorder prediction 732 749 - -
Psa2g1183 749 SUPERFAMILY DNA-binding pseudobarrel domain 285 390 IPR015300 -
Psa2g1183 749 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 553 - -
Psa2g1183 749 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 549 742 - -
Psa2g1183 749 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 553 - -
Psa2g1183 749 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 549 742 - -
Psa2g1183 749 Pfam B3 DNA binding domain 288 388 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1183 Psa-Chr2 89874917 89878985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1183 3 710 B3 DNA Binding Superfamily AT4G32010 42.597 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa2g1183 B3 1.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1183 - - gmx:100789848 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1183 2 89874917 89878985 Psa2g1183 2 89874917 89878985 ECH
Psa5g3432 5 267987009 267993224 Psa2g1183 2 89874917 89878985 PCT