Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1174 ATGTCTTTTCAGAAGCTGAAAATTGAAACTCCAAGTTCAATTTTTGAGGATAACCCATCAATCAAAACAAAGAGGAAACCCAAAAGAAAGCTTCTTCGAATCATAATCACTGACCATGATGCCACAGATTCTGATTCCTCCGGCGATGAAGGGAGAGAGAGAAACAACAGCCAAAGAACAACACAAAGAAAACCAAAAAGAGAAGTCCTTGAAATTAACATGCACCATCCCGTATTCGATTCTTCTTTCTCATTTTCTTCTCCTTCATCATCTTCTTCTTCTCTCGCATGCTCCGAGAAAAACCACAAAAAGTACAATAGACCTAAGAAAACACCAACCTCCTCCGCCACGCGCCACCGCAACAAGTTCCGTGGAGTGAGACAACGGCCGTGGGGAAAGTGGGCAGCTGAGATCCGAGACCCTGCCCAACGAAAACGTCTCTGGCTTGGAACATTTAACTCCGCCGAAGAAGCCGCCGCCGAGTACGACAGAGTTGCTGTGATGCTGAGAGGTCCTGACGCCGTTACCAACTTTCCTATTTTACAGGCGAAGGCGGAACTGGAAACTGAAGTACCACCGCCGGTGAATGGCGGAAATGACGGCGGAGCTGGTTACTACGACGCTCTGGCTTCGCCGACGTCTGTTTTAACTTATAACTGTGACTCGACGCCGTTCGACAGTCTCCGTTACGGAGACGTGGACGCTTTTGGGTTCCACATTGACGCGCCGTTAAGTTTGCCGGAAGTTAACGGTACGCTGACGTGTCATCAAAAGTTGGAAAAAGAAGAGGCGTTTGAAGAGTTTGATCTTGACGAGTTTATGACGTGGCCTTACTAA 837 0.4767 MSFQKLKIETPSSIFEDNPSIKTKRKPKRKLLRIIITDHDATDSDSSGDEGRERNNSQRTTQRKPKREVLEINMHHPVFDSSFSFSSPSSSSSSLACSEKNHKKYNRPKKTPTSSATRHRNKFRGVRQRPWGKWAAEIRDPAQRKRLWLGTFNSAEEAAAEYDRVAVMLRGPDAVTNFPILQAKAELETEVPPPVNGGNDGGAGYYDALASPTSVLTYNCDSTPFDSLRYGDVDAFGFHIDAPLSLPEVNGTLTCHQKLEKEEAFEEFDLDEFMTWPY* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1174 278 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Psa2g1174 278 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Psa2g1174 278 MobiDBLite consensus disorder prediction 33 69 - -
Psa2g1174 278 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Psa2g1174 278 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Psa2g1174 278 Gene3D AP2/ERF domain 121 181 IPR036955 GO:0003700|GO:0006355
Psa2g1174 278 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Psa2g1174 278 PIRSF PTI6 1 278 IPR017392 GO:0003700
Psa2g1174 278 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Psa2g1174 278 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 232 - -
Psa2g1174 278 MobiDBLite consensus disorder prediction 94 120 - -
Psa2g1174 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 22 232 - -
Psa2g1174 278 MobiDBLite consensus disorder prediction 103 120 - -
Psa2g1174 278 MobiDBLite consensus disorder prediction 18 69 - -
Psa2g1174 278 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1174 Psa-Chr2 89239756 89241667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1174 22 228 AP2-EREBP Transcription Factor Family AT4G27950 40.183 3.92e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g1174 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1174 K13434 - gmx:100800489 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1174 2 89239756 89241667 Psa2g1174 2 89239756 89241667 ECH
Psa5g3413 5 267063715 267065460 Psa2g1174 2 89239756 89241667 PCT