Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1165 ATGCTCGCTGCTGCTTCGAGGTACGCCAAACCCACCGGCGGCGGCAATTATGTACGGTCGCTTTTATCTTCTTCCGGCATCACAACTTACTCAATTCCCACCACAACAGGTTACCGCTACGGTTACAGTAACGGAATCAGTTTCAATAACCGCAACACCAGAACATGCCCGAGCTTACTCTTCTCCGTGAAAGGGTTTCTCTCTGATTCGTCATCATCATACGGCAGAGTAACCAATCCGTTCATACCACAACCTAATTCGAAGGTGGATGGAAGAGCGTTGTTCTCGTCTTCAGCTAAAACTGATGATGGAAGTCAGAACCAAAAGAATTCTACTACTGTTGCTAAATTGCCTCCAGGTGGTGGTGGACAAGTTGCCGATGTCAAGATCCTTCGGGTGCTTGCGAGTTACCTTTGGATGAAAGATAATCTCGAATTTCGGTTTCGGGTTATTGCTGCATTGTTTTTACTTGTTGGAGCTAAGGTTGTGAATGTTCAGGTCCCTTTCCTATTCAAGCTTGCAGTTGATTGGCTGAATACTGCCACGGGCAATGCTGGCGCCGTTGCTTCAAATCCTACTGTGATGGCACTTTTTGCTACTCCTGTGGCAGTGTTGATTGGATATGGGATTGCACGTTCTGGAGCTTCTGCCTTCAACGAACTGCGGACTGCTTTGTTTTCCAAGGTAGCACTGCGAACAATTCGATTAGTTTCAAGGAAGGTCTTTTCACATTTGCACGACCTTGACCTTCGATATCATCTAAGTCGAGAAACTGGTGCATTAAGTCGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCCGCTATGGTGTTCAATGTAGTACCCACCATATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCATGGATTACTTCCCTGTCAGTTGCCGCTTATGTTGTTTTCACACTTTCTATCACACAGTGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGATGCTAGTACTAGGGTTATTGATTCACTTATTAACTATGAGACGGTCAAATATTTCAATAATGAAGCTCATGAAACTGATCATTATGACAAGTACTTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACACAGTCTTGCTTTGTTGAACTTTGGTCAAAATGCTATATTTAGTGCTGCTCTTTCAACAGCAATGGTTCTGTGTTCTCATGGGATCATGAATGGCACAATGACCGTTGGTGATTTGGTGATGGTAAATGGGCTTCTCTTCCAACTGTCTCTTCCCCTCAATTTCCTTGGTAGTGTTTATCGCGAAACTATACAAAGTCTAATTGACATGAAATCCATGTTCCAATTACTTGAGGAAAGAGCAGACATTAGGGATAAAGAAAATGCCAAGCCTCTCAAACTTACTGGGGGGAGTATTCAATTTGAGAATGTACATTTTGGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCACTACTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTCAGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGAGATAACCCTTGAGAGTTTACGAAAGTCTATTGGCGTTGTTCCACAAGATACTGTACTTTTCAATGATACTATATTTCATAACATTCACTATGGTCGACTTTCAGCAACAGAAGAGGAGGTCTATGAAGCTTCCCGTCAAGCAGCAATCCATGACACTATCCTGAATTTCCCTGAGAAATACTCCACTGTTGTGGGAGAGCGAGGGCTCAAGGCTTTGGTGTGA 1866 0.425 MLAAASRYAKPTGGGNYVRSLLSSSGITTYSIPTTTGYRYGYSNGISFNNRNTRTCPSLLFSVKGFLSDSSSSYGRVTNPFIPQPNSKVDGRALFSSSAKTDDGSQNQKNSTTVAKLPPGGGGQVADVKILRVLASYLWMKDNLEFRFRVIAALFLLVGAKVVNVQVPFLFKLAVDWLNTATGNAGAVASNPTVMALFATPVAVLIGYGIARSGASAFNELRTALFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRAINFILSAMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVAAYVVFTLSITQWRTKFRKAMNKADNDASTRVIDSLINYETVKYFNNEAHETDHYDKYLKRYEDAALKTQHSLALLNFGQNAIFSAALSTAMVLCSHGIMNGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKSMFQLLEERADIRDKENAKPLKLTGGSIQFENVHFGYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIREITLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATEEEVYEASRQAAIHDTILNFPEKYSTVVGERGLKALV* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1165 621 Gene3D ABC transporter type 1, transmembrane domain 137 472 IPR036640 GO:0005524|GO:0016021
Psa2g1165 621 PANTHER BNAA10G12020D PROTEIN 48 618 - -
Psa2g1165 621 Pfam ABC transporter transmembrane region 150 435 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa2g1165 621 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 48 618 IPR039421 -
Psa2g1165 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 617 IPR027417 -
Psa2g1165 621 CDD ABC_6TM_ATM1_ABCB7 153 456 - -
Psa2g1165 621 Pfam ABC transporter 498 599 IPR003439 GO:0005524
Psa2g1165 621 SUPERFAMILY ABC transporter transmembrane region 145 461 IPR036640 GO:0005524|GO:0016021
Psa2g1165 621 MobiDBLite consensus disorder prediction 98 117 - -
Psa2g1165 621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 151 448 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa2g1165 621 MobiDBLite consensus disorder prediction 98 118 - -
Psa2g1165 621 Gene3D - 476 619 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1165 Psa-Chr2 88590703 88607399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1165 213 618 Calmodulin-binding Proteins AT2G36910 28.199 3.94e-36 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1165 K05662 - gmx:100779975 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1165 2 88590703 88607399 Psa2g1165 2 88590703 88607399 ECH