Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1140 ATGGAGATGCCATCATACTTATATTTATATCCCATTCAAGAAGATGAAGTTGATGTGCCACCACACATAAGCGATGCTTTTATTCCAATCCACAATCTTTCATTTAATGAGAACAAAACTTTTTCTCCAAAGAAAAAACTCACCAAGAAAATTGGTCATTGGAGTAAAAGAGAGCACAGGTTATTTTTAGAAGGGCTCGAAAGGTATGGCCATGGAAATTGGAAAAAGATTTCAAGACATATTGTTTCAAAATCATCGACTCAGGTTGCTAGCTATGCTCAAAAGTATTTCATCAGAAAGAAGAAGGAAAGAAGAAGGAGTTTTGACAACATTGCTTCATTCGTTGAGTTCTTTAACTTCATCCAAACATAA 372 0.3468 MEMPSYLYLYPIQEDEVDVPPHISDAFIPIHNLSFNENKTFSPKKKLTKKIGHWSKREHRLFLEGLERYGHGNWKKISRHIVSKSSTQVASYAQKYFIRKKKERRRSFDNIASFVEFFNFIQT* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1140 123 PANTHER TRANSCRIPTION FACTOR SRM1 36 113 - -
Psa2g1140 123 SMART sant 50 99 IPR001005 -
Psa2g1140 123 Pfam Myb-like DNA-binding domain 52 97 IPR001005 -
Psa2g1140 123 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 101 IPR017930 -
Psa2g1140 123 ProSiteProfiles Myb-like domain profile. 46 97 IPR001005 -
Psa2g1140 123 ProSiteProfiles SANT domain profile. 54 101 IPR017884 -
Psa2g1140 123 CDD SANT 54 97 IPR001005 -
Psa2g1140 123 Gene3D - 51 103 - -
Psa2g1140 123 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 100 IPR006447 GO:0003677
Psa2g1140 123 PANTHER TRANSCRIPTION FACTOR KUA1 36 113 - -
Psa2g1140 123 SUPERFAMILY Homeodomain-like 47 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1140 Psa-Chr2 86058919 86059505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1140 54 89 EF-hand Containing Proteins AT3G07740 41.667 6.68e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa2g1140 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1140 - - mtr:MTR_1g083180 87.8113