Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1109 ATGGTGCACTATCCTAACCTATTCTTCTTCTCAAGACTCTCTCAAAATAACAACTCCCTTATCCTCTCAACTTTTTATAGTATTCTCAATAGAAAAATGGGAAGGCAACCTTGTTGTGAGAAAGTGGGATTGAAAAAAGGACCATGGACTGCTGAGGAAGACAAGAAGCTCATCACTTTCATCCTCACTAATGGTCAATGCTGTTGGAGGGCTGTCCCTAAATTGGCAGGATTATTAAGGTGTGGAAAAAGTTGTAGACTTAGATGGACAAATTACTTGAGACCAGATTTAAAAAGAGGACTTTTATCAGAATATGAAGAGAAAATGGTGATTGATCTTCATGCTCAACTTGGGAACAGATGGTCGAAGATTGCTTCTAATCTACCAGGAAGAACAGATAATGAGATAAAAAATCATTGGAACACTCACATAAAGAAAAAGCTCAAGAAAATGGGGATTGACCCTATCACTCACAAACCACTAATTAGTAGTACAATGAATCAAACTCAAAATCAACAACTACACCAACCGATAGAAGAAAAACAACAAAACCAACAACCTTTGACAATTGACATTGACACAAAGATTGAGAAGCAAGAGACTTCAATTGAATCATCAAGTAACATTGAAATGAAGGAAAAAGGTGAAAGTACAATAACACCCTTATTTGACACAATGGAGTTAATTGATGGATTTTGTATAGATGAAGTTCCAATGATAGAACCTAATGAGATTATAGTGTCTAATTCATCTTCATCAACCTCTTCATCGTCTACATCAAATTCAACCAATTTTCTTGAAGATCTCCAACTTCCTGATTTTGAATGGTCTAATAATGATAACAAGGAAGAGAACAATAGCAACAATTTGGCTTTTTGGGATGATGACTTTATTAGTAGCTTGAATATTTTTATTAATGATGATGGTGGTTGTGTTAATAATGGTGAAAGAAAGCAAGCATTTGATGAGATGATTGTGGATTCAGAATCTTGGGCATATAGATTGTTTTGA 1011 0.3482 MVHYPNLFFFSRLSQNNNSLILSTFYSILNRKMGRQPCCEKVGLKKGPWTAEEDKKLITFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASNLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLISSTMNQTQNQQLHQPIEEKQQNQQPLTIDIDTKIEKQETSIESSSNIEMKEKGESTITPLFDTMELIDGFCIDEVPMIEPNEIIVSNSSSSTSSSSTSNSTNFLEDLQLPDFEWSNNDNKEENNSNNLAFWDDDFISSLNIFINDDGGCVNNGERKQAFDEMIVDSESWAYRLF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1109 336 CDD SANT 48 93 IPR001005 -
Psa2g1109 336 Pfam Myb-like DNA-binding domain 103 143 IPR001005 -
Psa2g1109 336 Pfam Myb-like DNA-binding domain 46 93 IPR001005 -
Psa2g1109 336 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
Psa2g1109 336 Gene3D - 43 99 - -
Psa2g1109 336 Gene3D - 102 192 - -
Psa2g1109 336 ProSiteProfiles Myb-like domain profile. 41 93 IPR001005 -
Psa2g1109 336 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 33 294 - -
Psa2g1109 336 MobiDBLite consensus disorder prediction 167 186 - -
Psa2g1109 336 CDD SANT 106 144 IPR001005 -
Psa2g1109 336 PANTHER MYB TRANSCRIPTION FACTOR 33 294 - -
Psa2g1109 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 93 IPR017930 -
Psa2g1109 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 148 IPR017930 -
Psa2g1109 336 SMART sant 45 95 IPR001005 -
Psa2g1109 336 SMART sant 98 146 IPR001005 -
Psa2g1109 336 SUPERFAMILY Homeodomain-like 43 140 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1109 Psa-Chr2 82902719 82905149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1109 33 336 MYB Transcription Factor Family AT5G16600 47.688 2.29e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g1109 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1109 K09422 - gmx:100792103 421.779