Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1096 ATGAATTTCACAATAAACCTGCTTATCACCATGACTACAGTGCCTGGACAGCCTGCCATTTTAATCCTCACAAGCTGCAGCAGTGTCAATGCTTGGAAGTGGCTTCCTGATATGAATATTATGGTATATGTTGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATGATGACAAAAAGCCCGGTAAACCAATAAAGTTCAATGCACTGTTGACTACATATGAAGTGATTTTGAAAGATAAGGTTGTTCTCTCCAAGATCAAATGGAATTATTTGATGGTAGATGAAGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTACACTTCCCTTCTAGAATTTAGCACCAAGAATAAGTTGCTCATCACCGGTACTCCGCTACAAAACAGTGTTGAAGACCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAGAATTTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCCTATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGCATTCTTAGGGTTGAAATAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGTGGAAGTGACAGTAATAAACTTGAGAGATGTTTCTCTTCTAAATATTGTGGTGGAATTGAAGAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGTGGAAGTGACAGTAATAAACTTGAGAGAATTGATTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGTTTGTTAGATTGCATGAAACCAAGCACCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATATTGGCGCAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGACGGCAGTACAAAATCTGAGGTGCGACAGCAGGCAATGGAACATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTCTAGGTATCAACCTTGCCACGACAGACACTGTCATTATATTTGATTCAGACTGGAATCCTCAAAATAACCTGCAGGCAATGAGTAAAGCTCATAGAAATGGGCAACAAGATGTTGTTAACATATATAGATTTGTGACAAGCAAAAATGTCGAAGAAGATATTCTGGAGCGTGCCAAGAAGACGATGGTTCTGGACCACTTGGTGATTCAAAAACTGAATGCAGAAGGTAGATTGGAGAAGAAAGAAGCCAAAAAGGGAGGAAGTTATTTTGATAAAAACGAGTTGTCTGCAATCTTACGATTTGGAGTAGAAGAGCTTTTTAAGGAAGAAAGAAATGATGGAGAAAGCAAGAAACGACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGACGGATGAAGGAGAACAAGGAAGCGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGCTGAGGAAGCTCTTGCTCCATGTTCTGCAAGAAATATTAAAAGCTACGCTGAGGCTGATCCATCTGAAAGGGGTAATAAAAGGAAAAAGAAGGAATTTGAACCACCTGAGCGAGTTCAGAAACGCCGTAAAGCAGAATATTCCGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTTAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGACGCACACCGTTTTTCTCGCGCCGTCATGAAATTCGGGAATGAGAACCAAATTGATTTAATTGCGGCTGACGTTGGTGGTGCAGTTGTGGCAGCTCCTCCTGAAGCACAGATAGAACTTTTCAATGCACTAATTGATGGTTGTTCAGAAGCAGAAGAAAAACAAAACCTGTTGATTGTGCTACAAGTCCAGCAAGGACTGTCGGTCTTCCGCAAAGTTCTGTTGGAATGCTTCCAGCTTCATCATCAGCAGCAGGATGAGCGGCTTCATCATCAGCAGCAGTACCGGAACAATAGCTTTACTAAGGATGAATTAGTATTAGCATTTGCAAGGAGTAGAGTCCTACAAATCATTGGTGCTACAAATAATTTGCATCGCCGTTCTGGGAGTGTGTTACCTCCACCACCAGATGAACCTAGACACATGCCATCAGCCACCAAAGGAGTGTCAAAAAGTCCTTTAGATATCCAGATTACAGGATCCTGTTCAAGCAATGGAGCTGCCAATTCAACAGCACTTCCTGCAGCAAACTCTTGGGCTAGGTGTGTATCTGGCAGTCTTCCACAGGATACTAGTTCATCGTGTTCTAATAATTTGGCCAAGAAAAAGATTGAAGCGTCTAATGGCCCCCAAGCCCTTATGCCGGGGGTTGTTTGCACTGAAACGTCTATTCTTGATACGAAAGAATCGGGAGAAGATGAAAATAATGTGCATTCCAATAGTGTAATTGTACCTTCAGCATTGAACAAACATCACATTGGCGGAAATTCTCAAACATCAGCTTTCGTAGGCCTTGATCAAGATAAGGCTGCACCCTCCACGAGTACAAGCTTCATGGAGACTGGCAGACCTCACAATTTGAATACTAACAACGCAGTTTCCAATCGGGATGTGCATGGCTTATGTTCTGAGTTATCATCCGTTAACATCAACAGTAATCTTAAAGATTCATATTTCACTCGGGATTCAGACAAGTTACTTTTTTCTCCTAACTCAATCAATTCCTCTCTAGGGAAGCATTTTCCTCAAGATGGATTTGAGAAGGTTGTGGAGAGAGAGGACACTGGCTTAGATGTTGATAACAAGGTTGCTTCAGACATCGGAGAAAACAACATTATATCTAACATTTTGTCTTTGGAATTAGATGCACGGGAAGATTCACTAGTTAAGTTGTTGGATGAAACTGATGAACCATATACATCCTTCAAAGCACCTGCTTTGCGGAAAATCCAAGACAAGAATCAGTCCAGGTTTTCCTTTGCCAGACAAGATGATTCCTTGAATAAGACATCTGTTTTGCAGCAATCTGGCAATCTGGGATCCCAAACAATTAAGCCTAATACGGAACTCTCATTAGCTGCAAAAGAAGGTCTTGGACTTAGCATTGGAGATGATGTTAGCAAACAATTTGTTCAAGACACACTTAAACAAGAGAGTCCCGTAGTTTCTGGAAGTACTAGCTTATCTTTAAGCATTAAGGAGCATTTGTTTACATCTGTTACAAGTCCGAAAATTAACAAGATAAATCCTGATCTTGATAAAGGAGAACCTGTCTCACTGGAATTATCTTTAAGCAAGGAGGAATGCAATACTTATATTTCAAATACTGATGCTAAAAGTGATAGTGACACTACTCGTGTTAATAGCAGGGCTAACTGGGATCTGAATACTACAATGCTTTGGGAATGA 3471 0.4082 MNFTINLLITMTTVPGQPAILILTSCSSVNAWKWLPDMNIMVYVGTRASREVCQQYEFYDDKKPGKPIKFNALLTTYEVILKDKVVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEDLWALLHFLDPNKFKSKDEFVQNYKNLSSFHENELANLPMELRPHILRRVIKDVEKSLPPKIERILRVEISVATIPSYLKVLTMAMVGTLVEVTVINLRDVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDSNKLERIDFSSGKLVILDKLFVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSEVRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATTDTVIIFDSDWNPQNNLQAMSKAHRNGQQDVVNIYRFVTSKNVEEDILERAKKTMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGVEELFKEERNDGESKKRLLSMNIDEILERAEKVEEKTDEGEQGSELLSAFKVANFCNAEEALAPCSARNIKSYAEADPSERGNKRKKKEFEPPERVQKRRKAEYSAPAVPMVDGASVQVRSWSYGNLSKRDAHRFSRAVMKFGNENQIDLIAADVGGAVVAAPPEAQIELFNALIDGCSEAEEKQNLLIVLQVQQGLSVFRKVLLECFQLHHQQQDERLHHQQQYRNNSFTKDELVLAFARSRVLQIIGATNNLHRRSGSVLPPPPDEPRHMPSATKGVSKSPLDIQITGSCSSNGAANSTALPAANSWARCVSGSLPQDTSSSCSNNLAKKKIEASNGPQALMPGVVCTETSILDTKESGEDENNVHSNSVIVPSALNKHHIGGNSQTSAFVGLDQDKAAPSTSTSFMETGRPHNLNTNNAVSNRDVHGLCSELSSVNINSNLKDSYFTRDSDKLLFSPNSINSSLGKHFPQDGFEKVVEREDTGLDVDNKVASDIGENNIISNILSLELDAREDSLVKLLDETDEPYTSFKAPALRKIQDKNQSRFSFARQDDSLNKTSVLQQSGNLGSQTIKPNTELSLAAKEGLGLSIGDDVSKQFVQDTLKQESPVVSGSTSLSLSIKEHLFTSVTSPKINKINPDLDKGEPVSLELSLSKEECNTYISNTDAKSDSDTTRVNSRANWDLNTTMLWE* 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1096 1156 MobiDBLite consensus disorder prediction 540 567 - -
Psa2g1096 1156 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 21 650 - -
Psa2g1096 1156 Coils Coil 480 500 - -
Psa2g1096 1156 SMART helicmild6 312 396 IPR001650 -
Psa2g1096 1156 Coils Coil 426 446 - -
Psa2g1096 1156 Pfam Helicase conserved C-terminal domain 283 396 IPR001650 -
Psa2g1096 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 470 IPR027417 -
Psa2g1096 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 184 IPR027417 -
Psa2g1096 1156 CDD SF2_C_SNF 281 407 - -
Psa2g1096 1156 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 286 437 IPR001650 -
Psa2g1096 1156 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 147 IPR014001 -
Psa2g1096 1156 Gene3D - 194 427 IPR027417 -
Psa2g1096 1156 MobiDBLite consensus disorder prediction 540 566 - -
Psa2g1096 1156 Pfam SNF2-related domain 29 254 IPR000330 GO:0005524|GO:0140658
Psa2g1096 1156 Gene3D - 19 193 IPR038718 -
Psa2g1096 1156 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 21 650 - -
Psa2g1096 1156 MobiDBLite consensus disorder prediction 721 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1096 Psa-Chr2 81612194 81616795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1096 33 422 RAD5 or RAD16-like Gene Family AT1G02670 25.714 1.29e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa2g1096 SNF2_N 4.5e-40 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1096 K11367 - gmx:100808039 1003.43