Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1079 ATGAAGTCTCCAAAGCTGAAAAATACTCTTCTGCTTTATTTCACCGCGTGTTTAATCGCCATTGTTTCCGGCGCCGATCTAGCTTCCGATAGAGAAACTCTACTGATTTTAAGAAACGCACTTGGAGGACGAACCCGTTCATGGAACGCGTCGGAGATAAACCCGTGTTTATGGGCTGGCGTTTCCTGCGGAAACGAGAGAATCACGTCGTTGAGATTACCGGCGATGGGTCTCTCCGGTGACCTTCCTGTAGGGTTAGGAAACCTCACCGAATTGAAGACACTTTCTCTTCGGTTCAACTTGTTAACTGGACCCATTCCTTCGGATTTTTCAAAACTCGTCTCTCTCCGGAGCCTTTACCTTCAGAATAATCTTCTCTCCGGCGAGGTTCCTGAATTTGTGTTTGGGTTGCAGAATTTGATACGGTTGAGTTTAGCTCATAACAAATTCAGCGGTGAAATTTCTTCTGGTTTCAACAACCTCACTCGTTTGGATACACTGTCTTTGGAACAAAACCGGTTCACCGGTTCTGTCCCCGACCTTAATGTTCCTCCTTTGCATGTATTCAACGTGTCGTATAATAATTTAACCGGGCCGATTCCATCGAGGTTTTCGCGGTTAGCTATAAGCGCTTTTTCGGGAAATTCGCTTTGTGGGAATCCCCTTCAAGTACCTTGTCCAGGAAACAATGACAGCAACAGCAAAAATGGATTATCTGGTGGAGCTATTGCTGGTATTGTAATAGGTTGTGTTTTTGGTTTTTTGTTGATTCTGGTTCTTTTGGTGTTCTTGTGTAGAAAAAGAACAAAAAATGATTCTGATAATGTACAACATGCCAAGAGTGTTGGTGTTGATGTTGATAATGGTGGTGGTGGTTTGAGTAATTCAGGCTCTGGTTTGGCTTCGGGTTCAGGTTCCGCTTCGGTTTCAGCTTCGGGTGTGTCATTACAAAAGAGTTTGGTGTTTGTCGGGAATGTGACTAGAAAGTTTAGTTTAGATGATTTGTTAAGAGCTTCTGCTGAAGTTTTGGGAAAAGGGACATTTGGAACAGCTTATAAGGCAGCATTGGAGATGGGAGTGACTGTGGCTGTGAAAAGGTTGAAGGATGTTACTGCAAGTGAAAGGGAATTCAAGGAGAAAATGGAGGAGGTAGGAAAATTGGTTCATGATAAACTGGTCCCACTTAGGGGTTATTATTATAGTAGAGATGAAAAGCTTGTTGTGTATGATTACATGCCAATGGGAAGCTTATCTGCACTCTTGCATGCAAATAATGGAACTGGAAGGACTCCACTAAATTGGGAAACAAGGTCCACCATAGCCCTTGGTGCTGCCCAAGGGATTGCATACCTACACTCACAAAGTCCAACATCTTCTCATGGAAACATCAAGTCATCAAACATCCTTCTCACCAAATCCTACGAGTCTCGTGTCTCCGACTTCGGCCTCGCGTATCTCGCTCTTCCAACCGCCACACCCAACCGAGTTTCTGGTTACCGTGCACCAGAGGTCACCGATACCCGCAAAGTATCCCAAAAAGCGGACGTCTACAGCTTCGGCATTATGCTTCTGGAGCTTCTCACAGGAAAAGCTCCTACTCATTCTACGCTGAATGATGAAGGAGTAGACCTACCGAGATGGGTCCAATCGATCGTCCAAGACGAATGGAACAGTGATGTTTTCGACATGGAGCTTCTGAGATACCAAAATGTGGAGGACGAAATGGTGAAACTTCTGCAGCTTGCTCTTGAATGTACTGCTCAATATCCTGATAAGAGACCTTCCATGGATGTGGTGGTAAGATTGATTGAGGAAATTTGTCATCTTAGTTTAGTGAAAGAGCAAGAAGAGATTATTGAGGATTCATGA 1869 0.4425 MKSPKLKNTLLLYFTACLIAIVSGADLASDRETLLILRNALGGRTRSWNASEINPCLWAGVSCGNERITSLRLPAMGLSGDLPVGLGNLTELKTLSLRFNLLTGPIPSDFSKLVSLRSLYLQNNLLSGEVPEFVFGLQNLIRLSLAHNKFSGEISSGFNNLTRLDTLSLEQNRFTGSVPDLNVPPLHVFNVSYNNLTGPIPSRFSRLAISAFSGNSLCGNPLQVPCPGNNDSNSKNGLSGGAIAGIVIGCVFGFLLILVLLVFLCRKRTKNDSDNVQHAKSVGVDVDNGGGGLSNSGSGLASGSGSASVSASGVSLQKSLVFVGNVTRKFSLDDLLRASAEVLGKGTFGTAYKAALEMGVTVAVKRLKDVTASEREFKEKMEEVGKLVHDKLVPLRGYYYSRDEKLVVYDYMPMGSLSALLHANNGTGRTPLNWETRSTIALGAAQGIAYLHSQSPTSSHGNIKSSNILLTKSYESRVSDFGLAYLALPTATPNRVSGYRAPEVTDTRKVSQKADVYSFGIMLLELLTGKAPTHSTLNDEGVDLPRWVQSIVQDEWNSDVFDMELLRYQNVEDEMVKLLQLALECTAQYPDKRPSMDVVVRLIEEICHLSLVKEQEEIIEDS* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1079 622 Pfam Leucine rich repeat 85 126 IPR001611 GO:0005515
Psa2g1079 622 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Psa2g1079 622 PANTHER OS05G0588300 PROTEIN 8 618 - -
Psa2g1079 622 CDD STKc_IRAK 343 606 - -
Psa2g1079 622 PANTHER INACTIVE RECEPTOR KINASE-RELATED 8 618 - -
Psa2g1079 622 Pfam Protein tyrosine and serine/threonine kinase 341 601 IPR001245 GO:0004672|GO:0006468
Psa2g1079 622 Gene3D Phosphorylase Kinase; domain 1 305 411 - -
Psa2g1079 622 Gene3D Ribonuclease Inhibitor 136 240 IPR032675 -
Psa2g1079 622 ProSiteProfiles Protein kinase domain profile. 337 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g1079 622 Gene3D Transferase(Phosphotransferase) domain 1 412 620 - -
Psa2g1079 622 SUPERFAMILY Protein kinase-like (PK-like) 341 603 IPR011009 -
Psa2g1079 622 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Psa2g1079 622 SUPERFAMILY L domain-like 42 210 - -
Psa2g1079 622 Gene3D Ribonuclease Inhibitor 30 135 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1079 Psa-Chr2 80958742 80962291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1079 26 606 Receptor kinase-like Gene Family AT1G48480 56.260 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa2g1079 Pkinase 2.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1079 - - aprc:113846223 835.484