Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1072 ATGATCGATAAGAAGGAGATGAAGGAAGTGGTTGAAGATGAGGAAATCAGGAACAATCAAATAGTGACATGTTCAAGACCTTCTTCTACTCGTTCATCTTTTTCATATGAAAGAGAATACAAAGTTCGTAACGTTCGAGATGGAATAAAATCATCAAGAGCAAGCAGATTCAATCTGCTAGAGAAAGAGTTAGGGTTAAAGAGTGGTTGGAGACAGTTCAGTCGCAAAGCTCTTTTTCCTGAATTTGTTATCGATCCTAATAACAGGTGGTATCGGGCATGGACCATTTTCAGATTATTATGGGCAATATACTCATCATTCTTCACCCCATTGGAGTTTGGATTTTTTCGTGGCCTGCCAGAGAATCTCTTTATACTGGACATCACAGGACAGCTTGCTTTTCTTGTGGACATTGTTTTGCGGTTCTTTGTTGCTTATAGAGACAGTCAGACCTATCGCATGGTCTATAGTCGTGCTCCTATCGCTATGCGGTATCTAAAATCTAGTTTTGTCATTGATCTTCTTGGATGTATGCCATGGGACCTCATCTACAAGGCTTGTGGATGGAGAGAGGAAGTGAGGTACCTATTGTGGATCAGATTATATAGGGCGCAGATAGTCGTGCAATTTTTCATGAATTTGGAAAAAGACATACGTATCAATTACATTATTGCTCGGATTGTGAAACTCTTAGTTGTTGAACTCTACTGCACCCACACAGCAGCCTGTATTTTCTACTATTTGGCTACTACACTACCTGAATCACAAGAGGGTTACACATGGATAGGAAGTTTGAAAATGGGTGACTATAGTTATTCAAAGTTCAGAGAAATTGATCTTTGGAAGCGCTACACGACATCATTGTATTTTGCTATTGTTACGATGACTACTGTCGGCTATGGTGATATACATGCTGTAAATATGAGGGAGATGGTATTCGTAATGGTTTATGTTTCACTGGACATGGTTCTGGGTGCTTATTTGATCGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAGGATGAGAGATTTGATGAAATATATGAATAGAAATCAACTTGGCAGGGATATCCGTGAACAAATAAAGGGTCACGTGCGCTTGCAGTTTGAGAGCAGCTATACCGACGCTGTTGTCCTTCACGACATTCCTATTTCTATTCGATCTAAGATATCCCAATCATTGTATTTGCCATACATTGAAAACATTCCCCTTTTTAGAGGATGCTCTTCAGAATTCATCAATCAGATTGTTACTAGGCTCCACGAGGAATTCTTTCTTCCTGGAGAAGTTATATTGCAACAAGGAAACGTTGTAGATCAACTATATTTTGTCTGCGACGGCGTGCTGGAGGAAGTAGGCACAGCTGAAGATGGGTCCGAAGAAACTGTTTCACTTTTAGAGAACAACAGTTCCTTTGGAGAAATATCAATTCTTTGCAACATCCCTCAGCCATATACTGTTCGTGTTTGTGAGTTGTGCAGGGTCCTGCGGCTTGATAAACAATCATTTTCAAATATCCTAGATATATACTTTAATGATGGGAAGAAATTATTAGACAACCTTGTAGAGGGAAAAGAGTCTATTAGAGGTAAGCAATTGGAGTCAGACATCACGTTTCATCTTGGAAAGCTAGAATTTGAACTTGCTTTGAAGGTCAATAGAGCAGCTTTTGAAGGTGATATATATCATCTAAAAAGTTTGATTCGAGCTGGAGCTGATCCTAAGAAGACAGATTATGATGGAAGATCACCTTTGCATCTTGCGGCATGCAGAGGGTATGAAGATATCACGCTTCTCCTTATTCATGAAGGTGTAGACATCAACATCAAAGATAACTTTGGGAACACACCACTACTTGAAGCAGTTAAGAATGGACACGATCAGGTTGCTTCTTTACTTGTTAGAGAAGGAGCCTCTATGAAGATAGATGATAGTGGTAGTTTTTTATGCACAGCAGTTGCAAGAGGAGATCCGGATTATGTTAAAAGGCTTTTATCTAATGGAATGGATCCTAATTTGAAAGATTACGACTATCGAACCCCTCTACATGTTGCTGCATCTGTAGGTTTAGTCTTCATGGCAAACTTGCTATTAGAAGCTGGAGCCAGTGTTTTTACTAAAGACAGATGGGGAAATACTCCGCTTGATGAAGCTCGGATGAGTGGAAATAAGAATCTTATAAAGATGCTGGAAGATGCAAAATCTGCTCATTTGACAGAATTCCCTTTTTCCCAAGAAATTACAGATAAAGTACATCCAAAGAAGTGCACAGTATTTCCTTTCCACCCATGGGGTCCAAAAGATTATAGAAAAATGGGTATAGTATTATGGGTTCCACACACCATTGAAGAGCTAATCAAAACAGCATCAGATCAGATAGGATTTTCTAGTGACTCTTGTATTTTATCCGAAGATGCTGGTAAAATTACTGATGTGAGCATGATTAAGGACGATCAGAAGCTGTATTTAGTCAGCGAAACACATTAG 2511 0.3927 MIDKKEMKEVVEDEEIRNNQIVTCSRPSSTRSSFSYEREYKVRNVRDGIKSSRASRFNLLEKELGLKSGWRQFSRKALFPEFVIDPNNRWYRAWTIFRLLWAIYSSFFTPLEFGFFRGLPENLFILDITGQLAFLVDIVLRFFVAYRDSQTYRMVYSRAPIAMRYLKSSFVIDLLGCMPWDLIYKACGWREEVRYLLWIRLYRAQIVVQFFMNLEKDIRINYIIARIVKLLVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKMGDYSYSKFREIDLWKRYTTSLYFAIVTMTTVGYGDIHAVNMREMVFVMVYVSLDMVLGAYLIGNMTALIVKGSKTEKFRDRMRDLMKYMNRNQLGRDIREQIKGHVRLQFESSYTDAVVLHDIPISIRSKISQSLYLPYIENIPLFRGCSSEFINQIVTRLHEEFFLPGEVILQQGNVVDQLYFVCDGVLEEVGTAEDGSEETVSLLENNSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFSNILDIYFNDGKKLLDNLVEGKESIRGKQLESDITFHLGKLEFELALKVNRAAFEGDIYHLKSLIRAGADPKKTDYDGRSPLHLAACRGYEDITLLLIHEGVDINIKDNFGNTPLLEAVKNGHDQVASLLVREGASMKIDDSGSFLCTAVARGDPDYVKRLLSNGMDPNLKDYDYRTPLHVAASVGLVFMANLLLEAGASVFTKDRWGNTPLDEARMSGNKNLIKMLEDAKSAHLTEFPFSQEITDKVHPKKCTVFPFHPWGPKDYRKMGIVLWVPHTIEELIKTASDQIGFSSDSCILSEDAGKITDVSMIKDDQKLYLVSETH* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1072 836 PANTHER POTASSIUM CHANNEL SKOR-LIKE 35 835 - -
Psa2g1072 836 Pfam KHA, dimerisation domain of potassium ion channel 762 831 IPR021789 -
Psa2g1072 836 PRINTS EAG/ELK/ERG potassium channel family signature 127 137 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa2g1072 836 PRINTS EAG/ELK/ERG potassium channel family signature 236 246 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa2g1072 836 PRINTS EAG/ELK/ERG potassium channel family signature 284 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa2g1072 836 PRINTS EAG/ELK/ERG potassium channel family signature 328 337 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa2g1072 836 CDD CAP_ED 412 526 IPR000595 -
Psa2g1072 836 ProSiteProfiles Ankyrin repeat profile. 621 653 IPR002110 GO:0005515
Psa2g1072 836 ProSiteProfiles KHA domain profile. 763 836 IPR021789 -
Psa2g1072 836 SUPERFAMILY Voltage-gated potassium channels 86 337 - -
Psa2g1072 836 ProSiteProfiles Ankyrin repeat region circular profile. 588 620 - -
Psa2g1072 836 Pfam Ion transport protein 92 337 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa2g1072 836 SUPERFAMILY Ankyrin repeat 562 740 IPR036770 -
Psa2g1072 836 Gene3D Jelly Rolls 383 544 IPR014710 -
Psa2g1072 836 SMART ANK_2a 652 681 IPR002110 GO:0005515
Psa2g1072 836 SMART ANK_2a 621 650 IPR002110 GO:0005515
Psa2g1072 836 SMART ANK_2a 718 748 IPR002110 GO:0005515
Psa2g1072 836 SMART ANK_2a 685 714 IPR002110 GO:0005515
Psa2g1072 836 SMART ANK_2a 588 617 IPR002110 GO:0005515
Psa2g1072 836 SUPERFAMILY cAMP-binding domain-like 340 529 IPR018490 -
Psa2g1072 836 Pfam Cyclic nucleotide-binding domain 432 516 IPR000595 -
Psa2g1072 836 ProSiteProfiles Ankyrin repeat region circular profile. 621 652 - -
Psa2g1072 836 PANTHER POTASSIUM CHANNEL AKT1 35 835 IPR045319 GO:0005249|GO:0006813
Psa2g1072 836 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515
Psa2g1072 836 SMART cnmp_10 412 530 IPR000595 -
Psa2g1072 836 PRINTS Ankyrin repeat signature 589 604 IPR002110 GO:0005515
Psa2g1072 836 PRINTS Ankyrin repeat signature 668 682 IPR002110 GO:0005515
Psa2g1072 836 Pfam Ankyrin repeats (3 copies) 563 651 IPR002110 GO:0005515
Psa2g1072 836 Pfam Ankyrin repeats (3 copies) 658 740 IPR002110 GO:0005515
Psa2g1072 836 Gene3D - 90 338 - -
Psa2g1072 836 ProSiteProfiles cAMP/cGMP binding motif profile. 412 532 IPR000595 -
Psa2g1072 836 ProSiteProfiles Ankyrin repeat profile. 652 684 IPR002110 GO:0005515
Psa2g1072 836 Gene3D - 653 748 IPR036770 -
Psa2g1072 836 ProSiteProfiles Ankyrin repeat region circular profile. 685 717 - -
Psa2g1072 836 Gene3D - 551 652 IPR036770 -
Psa2g1072 836 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1072 Psa-Chr2 80252385 80275056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1072 659 738 Ion Channels AT5G37500 32.353 1.90e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1072 K21867 - gmx:100814385 1358.97