Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1042 ATGGTTTTATCATGGACAAAAGGTAGTAGAGTTTTCCGTCGTGCAAGAAAAGGCAAAGAGTTATTATCAAACTCATGCAACGATTTACAAGTGGAGATAGCGATTCCGACTCATTTTCGTTGCCCGGTAACACTAGATTTAATGAAAGATCCTGTTACACTTTCAACCGGCATAACCTACGACAGGGAGAGCATCGAGAAATGGATTGAATCTGGTAACAAAACGTGTCCGGTTACGAAAACCGAGTTAACATCCTTCGACATCATTCCAAATCACTCACTTCGTAGAATGATTCAAGATTGGTGCGTTCAACACCGTTCCTATGGAGTTGAGAGAATCCCAACTCCACGTATTCCGGTAAGTCCGTACGAGGTTAAAGACGCGTGTACGAGGATCTTGTCGGCGGCGCAAATGGGAGACGAGAACAAGGCTATTGAATTGGTGAAGAAGATAAAGGCTTGGGGAAAAGAGAGTGAGAGGAACAAGAAATGTATAGTTTCAAATGGTGCATCTATTGTTCTTTCGAATGTTTTTGATTCTTTCTCACGTGGTTCCATTGAGAAGAATTTTGTTGTTTTGGAGGAGATTTTGGAGGTGCTGACGTGGATGCGTCCTATTCCGGAAGAGGGTAGATTTCTCTATTTGGGATCTTCAAATTCTTTGAGTTGTTTGGTTTGGTTCTTAAATGCTAAACAACAAGTTTCAACTAGACAAAATGCTTCTTTGTTGCTTAAGGAAATTCATGTTGAGTCATTGGTGAAAGTTGAAGGAATATTTGAATCTTTGGTGAACATGGTTAAGGTTAATGTTGGTGATGTTTCTACAAAAGCATGTTTGTCAACAATTTTTCACTTGGTTTACTCATCAAAGAGTAAAAAAGTGATTATAGAGAGGTTTGTTGAATTGGGATTAGTTTCAATTTTATTGGAGATTCTAGTTGATGCTGAAAAAGGGACATGTGAGAAAGCTTTAGGCGTGTTGAATTGTCTCTGTGATAGTGAAAATGGGGTGCAAATAGCAAAGTCAAATGCTTTGACTTTGCCTCTTGTTATTAAGAAGCTTTTGAGGGTTTCTGAATTGAGTTCAAGTTTTGTTGTTTCTATTGTTTACAAGATTTGTGATAAGGCTGAGGAAGGTGTTTTGATTGAGGCAATTCAAGTTGGGATGTTTCAGAAACTACTTGTTTTGTTGCAAGTGGGTTGTGCTGATAGTACAAAGGAAAAAGCTACTGAATTGTTGAAGTTATTGAATGGTTATAAGAGCAAAGCTGAGTGTGTTGATTCATCATTGGATCTCATGCATCTAAAGAAGCCTTTCTAA 1320 0.3833 MVLSWTKGSRVFRRARKGKELLSNSCNDLQVEIAIPTHFRCPVTLDLMKDPVTLSTGITYDRESIEKWIESGNKTCPVTKTELTSFDIIPNHSLRRMIQDWCVQHRSYGVERIPTPRIPVSPYEVKDACTRILSAAQMGDENKAIELVKKIKAWGKESERNKKCIVSNGASIVLSNVFDSFSRGSIEKNFVVLEEILEVLTWMRPIPEEGRFLYLGSSNSLSCLVWFLNAKQQVSTRQNASLLLKEIHVESLVKVEGIFESLVNMVKVNVGDVSTKACLSTIFHLVYSSKSKKVIIERFVELGLVSILLEILVDAEKGTCEKALGVLNCLCDSENGVQIAKSNALTLPLVIKKLLRVSELSSSFVVSIVYKICDKAEEGVLIEAIQVGMFQKLLVLLQVGCADSTKEKATELLKLLNGYKSKAECVDSSLDLMHLKKPF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1042 439 Gene3D - 120 438 IPR011989 -
Psa2g1042 439 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Psa2g1042 439 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 439 - -
Psa2g1042 439 SUPERFAMILY ARM repeat 131 416 IPR016024 -
Psa2g1042 439 Pfam U-box domain 35 106 IPR003613 GO:0004842|GO:0016567
Psa2g1042 439 PANTHER WDSAM1 PROTEIN 9 439 IPR045185 GO:0061630
Psa2g1042 439 CDD RING-Ubox_PUB 39 80 IPR045210 -
Psa2g1042 439 SUPERFAMILY RING/U-box 32 111 - -
Psa2g1042 439 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Psa2g1042 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 112 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1042 Psa-Chr2 78489058 78491002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1042 10 439 U-box Gene Family AT5G37490 44.851 3.34e-118 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1042 - - gmx:100795913 640.958