Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1011 ATGGAGAAAAGTAAGAGCAGAGTTGTGAGAAAAGGTGCATGGACATATGAAGAAGACAAGTTACTGAAAGCTTGTATTGAAATGTATGGTGAAGGAAAATGGCATTTAATTCCACAAAGAGCAGGATTGAATAGGTGCAGGAAAAGCTGTAGATTGAGATGGTTAAATTATTTAAACCCCACCATTAACAGAGAAAGTTTTTCTGAGGATGAAGTTGATATGATTCTAAGGTTACACAAACTTTTAGGAAACAGATGGGCATTAATTGCTGCAAGGCTTCCGGGTAGAACATTTAATGACGTGAAGAATTATTGGCATACACACTTGCGTAAGAAGATGATTTCAAAAAGTTTAGAAGAAGAAAAAGAGAAATTTAAAGAAACTATGAAAGCTCATGAAGTTATTAAACCTCAACCTCGAACTTTTTCATCTCATTCACCTTGGTTGAATGGGAAAAATATTGTGAAACCAATAGTGTCGGTTTCAATGAAAGATGCTAGTGTTACTAAGGATAGTAACATAGAAAGTACTATAATACCAATTAATGGTGATGGAGACTGTGCTGCACCCCCATCTCTCGGAAACTCAACAATGTGGTGGGAAAGTTTGTTGGGAGCGAGCAATGACAAAATTGGTTCATGCTCTTTATTACAAGAGGAGGGAAAGTCCATTTTAGGGTTATCAAATATTGAGAACTATTTTATGGAAGGTTCCAATGATATTAATGTAGGAGATTGTTATTGGGATTCTAGTCTTTGTGAATTTGATTCTCTTTTAGATATTTTAAATTAG 792 0.3497 MEKSKSRVVRKGAWTYEEDKLLKACIEMYGEGKWHLIPQRAGLNRCRKSCRLRWLNYLNPTINRESFSEDEVDMILRLHKLLGNRWALIAARLPGRTFNDVKNYWHTHLRKKMISKSLEEEKEKFKETMKAHEVIKPQPRTFSSHSPWLNGKNIVKPIVSVSMKDASVTKDSNIESTIIPINGDGDCAAPPSLGNSTMWWESLLGASNDKIGSCSLLQEEGKSILGLSNIENYFMEGSNDINVGDCYWDSSLCEFDSLLDILN* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1011 263 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Psa2g1011 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Psa2g1011 263 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Psa2g1011 263 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 8 166 - -
Psa2g1011 263 Coils Coil 115 135 - -
Psa2g1011 263 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Psa2g1011 263 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Psa2g1011 263 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Psa2g1011 263 Gene3D - 11 63 - -
Psa2g1011 263 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 166 - -
Psa2g1011 263 SMART sant 10 60 IPR001005 -
Psa2g1011 263 SMART sant 63 111 IPR001005 -
Psa2g1011 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Psa2g1011 263 CDD SANT 66 109 IPR001005 -
Psa2g1011 263 Gene3D - 65 136 - -
Psa2g1011 263 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1011 Psa-Chr2 77225874 77227691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1011 9 242 MYB Transcription Factor Family AT1G66370 45.098 1.59e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g1011 Myb_DNA-binding 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1011 - K16166 mtr:MTR_5g078860 266.159