Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1005 ATGCCTTTATTTTTCTGTGGACAACAAAGGAAAGTGTGTAGCTATCAAGTACATATGGAGAAAAGTAAGAGCAGAGGTGTGAGAAAAGGTGCATGGACATATGAAGAAGACAAGTTACTGAAAGCTTGTATTGAAATGTATGGTGAAGGAAAATGGCATTTAATTCCACAAAGAGCAGGATTGAATTATTTAAACCCTGTTATCAACAGAGAAAGTTTGTCTGAGGATGAAGTTGATATGATCTTAAGGTTACACAAACTTCTAGGAAACAGGTATAGGCAAAATTGTGATGTTAAAATCACTTCACAAAGTTGTGAAGTGAACATCACTTCATAA 336 0.3482 MPLFFCGQQRKVCSYQVHMEKSKSRGVRKGAWTYEEDKLLKACIEMYGEGKWHLIPQRAGLNYLNPVINRESLSEDEVDMILRLHKLLGNRYRQNCDVKITSQSCEVNITS* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1005 111 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 68 IPR017930 -
Psa2g1005 111 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 25 92 - -
Psa2g1005 111 Pfam Myb-like DNA-binding domain 29 60 IPR001005 -
Psa2g1005 111 ProSiteProfiles Myb-like domain profile. 24 70 IPR001005 -
Psa2g1005 111 SUPERFAMILY Homeodomain-like 30 93 IPR009057 -
Psa2g1005 111 Gene3D - 19 102 - -
Psa2g1005 111 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 25 92 - -
Psa2g1005 111 CDD SANT 31 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1005 Psa-Chr2 76621515 76622505 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1005 25 92 MYB Transcription Factor Family AT1G66370 56.250 4.26e-25 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa2g1005 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1005 - K09422 mtr:MTR_5g078860 120.168