Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0997 ATGGAACCATGCAGCAAAGAAAGTGTTGATTTCTCGACAGATCTTAATAAGAATAACTCCGTTTCTGCGACTATTTCCGACCCAAAAATTCTCGATTGCCACAACTGTTTCAAACCCCTATGTGCTCCCGTCTTTCAGTGTGAAAATGGTCATATTGCTTGCTCTACCTGCTGTTCTAAATTTAAGAACAAATGTCAAAAGTGTAGAAAATGTTCAATGGACATTATATTACAACGTTGTAGAGTCATTGAGAATCTATTGCAATGTATCGAAATACCATGCCCAAATGAAAAACATGGTTGCAAGGAGACAATAACTTATAGTAGAAAGAGAAACCATGAAGAAGAATGTGTGTATGGGCCATGTCACTGTCCTCATTCAGATTGTGACTTTGTTGCAATACCAGAAGAGTTGTCCAAACATTTCAGCAATAAACACCGGAGTTCTCGGATCAAATTTTCTTATGGCCAGTTCTTCACTCTCTCCTTGAAGTCTTATGATGAAACCATTGTTCTTCAAGAGGAAATGGATGACAAATTATTTATTCTCAATCATAGTTCTACAATTCTGGGAACTGCAGTGAATATTAACATCATTGATTCTATTTCTTCGGAATCTGAGTATGGTTATGTTATTTGGGCTAAGTCCAAGAAATGCTGTATGAAGTTACATGCCTCTGCAGAAAGTGTCCGACGGGTAACTTCCCCCATACTTTCATCAGAATTCCTCATGATTCCATCTGGTTATATTAATTCTTCTCCATCCACCGAACTAGAAATTCGCATAACATTCAAGATGCAAATATTCATTCAAACAGAGTCCAGAAAGAGGATTATCCTGAAGGTGGATAGTTTAGATACAATAGCCATGGTGAAGGAGAAGATTCACGACAAGAATGTGCGCCAACAATGTTTGTTCTTTGATGGTAAGAAACTAGAGGACCTCCGCTCCATCGCCGATTACAACATTAAAGAGAATTCGATCCTCCACCTCATCATTGGCCCCCCTCCTCCTCAGCCCCCATTCCTGTTCCATCAATTTGGACTATAA 1050 0.3895 MEPCSKESVDFSTDLNKNNSVSATISDPKILDCHNCFKPLCAPVFQCENGHIACSTCCSKFKNKCQKCRKCSMDIILQRCRVIENLLQCIEIPCPNEKHGCKETITYSRKRNHEEECVYGPCHCPHSDCDFVAIPEELSKHFSNKHRSSRIKFSYGQFFTLSLKSYDETIVLQEEMDDKLFILNHSSTILGTAVNINIIDSISSESEYGYVIWAKSKKCCMKLHASAESVRRVTSPILSSEFLMIPSGYINSSPSTELEIRITFKMQIFIQTESRKRIILKVDSLDTIAMVKEKIHDKNVRQQCLFFDGKKLEDLRSIADYNIKENSILHLIIGPPPPQPPFLFHQFGL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0997 349 Gene3D - 260 339 - -
Psa2g0997 349 SUPERFAMILY TRAF domain-like 90 251 - -
Psa2g0997 349 Pfam Ubiquitin family 268 333 IPR000626 GO:0005515
Psa2g0997 349 ProSiteProfiles Ubiquitin domain profile. 266 333 IPR000626 GO:0005515
Psa2g0997 349 Pfam Seven in absentia protein family 79 236 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa2g0997 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 264 IPR044286 -
Psa2g0997 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 142 IPR013083 -
Psa2g0997 349 SUPERFAMILY Ubiquitin-like 250 338 IPR029071 -
Psa2g0997 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 264 - -
Psa2g0997 349 SMART ubq_7 266 334 IPR000626 GO:0005515
Psa2g0997 349 ProSiteProfiles Zinc finger SIAH-type profile. 89 147 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0997 Psa-Chr2 75830224 75832249 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0997 266 333 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 53.521 2.35e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0997 K04506 - gmx:100778869 221.09