Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa2g0990 | ATGAAAGCAACATTGAACTACGGAAGACCAAAAACCCCAATCCCTCTCAAAGCTTCAAGAATGTCAAGTATCTCGTCTGATCGTGTAATGGAGCCATGCAACATAGACTCTGAAAAGAGCGTTGATTCAACAAAAGAAGTTCGTATGAATAACTCACTGCATGTCAAGATTTCCAACCCACACGCATTTGATTGTTGCGTTTGTCTTCACCTCTTGACCATTCCCGTTTTTCAGTGTGATAATGGTCATATTGTTTGCTCAACTTGCTGTGATAAACTCGGGAACAAGTGTGACAAGTGCTCAAAACAAATTAGCTTAAAACCTTGTAGAGAATTTGAGGATCAATCGCAATCTATCAAGATGTCATGCCCGAATGAAAAATATGGTTGTAGGGAGACAATTAGTTGCTGTAGAAAGAGAAAGCATGGAGAAGAATGCATCTATGTGCCATGCTATTGTCCCCTTTCAGGTTGTGATTTGGTTGCCCCATTAGAAGTGTTGTACAACCATTTCAACCGTGAACACTGCGATTCTCTGATTGAATTTTCTTATGGCCACCCCTTCGTTGTCTCCTTGAAGCCTAATGATGGAGCCGTGGTTCTCCAAGAGGAAAATGATGGCAGACTATATACTCTCAATAATAGTATTGTCATGAATATGGGAAATGCAGTCAATATTAGCTGCATCGATCCTAACTCTTCTTCCGAGTCTGGATATAGTTATGATATATTGGCCAAGTCTAAGTTTGGCAGTCTGCTGAAGTTACATTCTTTTCCGAAGAATGTCCAACAGGCTACTCTAGCAACTCGTTCATCCGAGTTCCTCGTGATTCCAATTGGTTATTTTAGTTCTTCTGATCCTCTCAAACTAGAAATATGCATAACCCCCAAGATGAAAATACTCATCGAGACCCTGACTGGAAAGGTGATCACCCTGATGGTTGAGAGTTCAGATGCGATAGCCAATGTGAAGGAGAGGATTCTTGACAAGGAAGGCTTCCTGGTGCACACGCAACGTCTGTACTTTGACAATCGGCAGCTAGATGACAGCCAGACCCTTGCCAGTTACAACATCAAAGAGATGTCAACGCTTCACCTCACTCTCTGCCTCCCCTAG | 1116 | 0.4229 | MKATLNYGRPKTPIPLKASRMSSISSDRVMEPCNIDSEKSVDSTKEVRMNNSLHVKISNPHAFDCCVCLHLLTIPVFQCDNGHIVCSTCCDKLGNKCDKCSKQISLKPCREFEDQSQSIKMSCPNEKYGCRETISCCRKRKHGEECIYVPCYCPLSGCDLVAPLEVLYNHFNREHCDSLIEFSYGHPFVVSLKPNDGAVVLQEENDGRLYTLNNSIVMNMGNAVNISCIDPNSSSESGYSYDILAKSKFGSLLKLHSFPKNVQQATLATRSSEFLVIPIGYFSSSDPLKLEICITPKMKILIETLTGKVITLMVESSDAIANVKERILDKEGFLVHTQRLYFDNRQLDDSQTLASYNIKEMSTLHLTLCLP* | 372 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa2g0990 | 371 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 | 37 | 300 | - | - | |
Psa2g0990 | 371 | SUPERFAMILY | Ubiquitin-like | 281 | 368 | IPR029071 | - | |
Psa2g0990 | 371 | SUPERFAMILY | TRAF domain-like | 118 | 295 | - | - | |
Psa2g0990 | 371 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 | 37 | 300 | IPR044286 | - | |
Psa2g0990 | 371 | Gene3D | - | 294 | 371 | - | - | |
Psa2g0990 | 371 | PRINTS | Ubiquitin signature | 308 | 328 | IPR019956 | - | |
Psa2g0990 | 371 | PRINTS | Ubiquitin signature | 329 | 349 | IPR019956 | - | |
Psa2g0990 | 371 | PRINTS | Ubiquitin signature | 350 | 371 | IPR019956 | - | |
Psa2g0990 | 371 | ProSiteProfiles | Zinc finger SIAH-type profile. | 118 | 176 | IPR013010 | GO:0008270 | |
Psa2g0990 | 371 | SMART | ubq_7 | 298 | 369 | IPR000626 | GO:0005515 | |
Psa2g0990 | 371 | Pfam | Ubiquitin family | 300 | 368 | IPR000626 | GO:0005515 | |
Psa2g0990 | 371 | ProSiteProfiles | Ubiquitin domain profile. | 298 | 371 | IPR000626 | GO:0005515 | |
Psa2g0990 | 371 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 171 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa2g0990 | Psa-Chr2 | 75694408 | 75696870 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa2g0990 | 298 | 370 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 60.274 | 6.26e-21 | 85.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa2g0990 | K04506 | - | gmx:100797881 | 222.631 |