Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0990 ATGAAAGCAACATTGAACTACGGAAGACCAAAAACCCCAATCCCTCTCAAAGCTTCAAGAATGTCAAGTATCTCGTCTGATCGTGTAATGGAGCCATGCAACATAGACTCTGAAAAGAGCGTTGATTCAACAAAAGAAGTTCGTATGAATAACTCACTGCATGTCAAGATTTCCAACCCACACGCATTTGATTGTTGCGTTTGTCTTCACCTCTTGACCATTCCCGTTTTTCAGTGTGATAATGGTCATATTGTTTGCTCAACTTGCTGTGATAAACTCGGGAACAAGTGTGACAAGTGCTCAAAACAAATTAGCTTAAAACCTTGTAGAGAATTTGAGGATCAATCGCAATCTATCAAGATGTCATGCCCGAATGAAAAATATGGTTGTAGGGAGACAATTAGTTGCTGTAGAAAGAGAAAGCATGGAGAAGAATGCATCTATGTGCCATGCTATTGTCCCCTTTCAGGTTGTGATTTGGTTGCCCCATTAGAAGTGTTGTACAACCATTTCAACCGTGAACACTGCGATTCTCTGATTGAATTTTCTTATGGCCACCCCTTCGTTGTCTCCTTGAAGCCTAATGATGGAGCCGTGGTTCTCCAAGAGGAAAATGATGGCAGACTATATACTCTCAATAATAGTATTGTCATGAATATGGGAAATGCAGTCAATATTAGCTGCATCGATCCTAACTCTTCTTCCGAGTCTGGATATAGTTATGATATATTGGCCAAGTCTAAGTTTGGCAGTCTGCTGAAGTTACATTCTTTTCCGAAGAATGTCCAACAGGCTACTCTAGCAACTCGTTCATCCGAGTTCCTCGTGATTCCAATTGGTTATTTTAGTTCTTCTGATCCTCTCAAACTAGAAATATGCATAACCCCCAAGATGAAAATACTCATCGAGACCCTGACTGGAAAGGTGATCACCCTGATGGTTGAGAGTTCAGATGCGATAGCCAATGTGAAGGAGAGGATTCTTGACAAGGAAGGCTTCCTGGTGCACACGCAACGTCTGTACTTTGACAATCGGCAGCTAGATGACAGCCAGACCCTTGCCAGTTACAACATCAAAGAGATGTCAACGCTTCACCTCACTCTCTGCCTCCCCTAG 1116 0.4229 MKATLNYGRPKTPIPLKASRMSSISSDRVMEPCNIDSEKSVDSTKEVRMNNSLHVKISNPHAFDCCVCLHLLTIPVFQCDNGHIVCSTCCDKLGNKCDKCSKQISLKPCREFEDQSQSIKMSCPNEKYGCRETISCCRKRKHGEECIYVPCYCPLSGCDLVAPLEVLYNHFNREHCDSLIEFSYGHPFVVSLKPNDGAVVLQEENDGRLYTLNNSIVMNMGNAVNISCIDPNSSSESGYSYDILAKSKFGSLLKLHSFPKNVQQATLATRSSEFLVIPIGYFSSSDPLKLEICITPKMKILIETLTGKVITLMVESSDAIANVKERILDKEGFLVHTQRLYFDNRQLDDSQTLASYNIKEMSTLHLTLCLP* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0990 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 37 300 - -
Psa2g0990 371 SUPERFAMILY Ubiquitin-like 281 368 IPR029071 -
Psa2g0990 371 SUPERFAMILY TRAF domain-like 118 295 - -
Psa2g0990 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 37 300 IPR044286 -
Psa2g0990 371 Gene3D - 294 371 - -
Psa2g0990 371 PRINTS Ubiquitin signature 308 328 IPR019956 -
Psa2g0990 371 PRINTS Ubiquitin signature 329 349 IPR019956 -
Psa2g0990 371 PRINTS Ubiquitin signature 350 371 IPR019956 -
Psa2g0990 371 ProSiteProfiles Zinc finger SIAH-type profile. 118 176 IPR013010 GO:0008270
Psa2g0990 371 SMART ubq_7 298 369 IPR000626 GO:0005515
Psa2g0990 371 Pfam Ubiquitin family 300 368 IPR000626 GO:0005515
Psa2g0990 371 ProSiteProfiles Ubiquitin domain profile. 298 371 IPR000626 GO:0005515
Psa2g0990 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 171 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0990 Psa-Chr2 75694408 75696870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0990 298 370 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 60.274 6.26e-21 85.9