Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0989 ATGGAACCATGCATTGGAGACTCTGTTGAATCAGCAAAAGATGATAGCAAGAGTAACCCCATTTCAGTGATGATTTCCGACTCACAAGCCTTTGATTGCTGCAAATGTTTCCAACCTTTAACTATTCCCGTATTTATGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTGCCTAAGCCTTGTGAAAGAGTGTGACAAGTGCTCAAAGAGCATTAGCTTAAAGCGTTGTAAAGCCTTTGACAATGTATTGAAATCTATCAAGATATCTTGCTCAAATAGAAAGCATGGCTGCATGGAGACAATGAGTTACAGTGAGAAGAAGAAACATGAAGAAAAATGCATCTATTATCCATGTAAATGTCCTCTTTTCGGCTGTTACTTTGTGGCTTCATATGAATTGTTATCCAACCATTTCAGCCATAAACATGGGGATTCTCTAATCAAATTTTCCTACGGTAACTCCTTCATTGTCTCCTTGAAATCTAGTGATAAAGTCATTGTTCTTCAAGAAAAAAACAATGGAAAACTATTTATTCTCAACAATAATACTCTAAGCATGGGAAATGCTATTAATATTAGCTGCATTGGTCCTAAGTCCTCCGCGATATGTTATTGTTATGATATATCAGCAAGGTCCGATATATGCAGTATAAAGTTAGAGTCTTCCACAAAGAATGTTCAAGAGGTTGATTTAACAACTCTTTCACCAGAGTTCCTCGTAATTCCATTTGGCTGTTTTGGTTCTTCAAAAATTCTCAAGCTAGAAATTCGCATTAACCTCAAGATACTCCTATTTAAGGTGGAGAGTTCAGGACACAATAGCTACTTTTGA 834 0.3657 MEPCIGDSVESAKDDSKSNPISVMISDSQAFDCCKCFQPLTIPVFMCDNGHIVCSTCCLSLVKECDKCSKSISLKRCKAFDNVLKSIKISCSNRKHGCMETMSYSEKKKHEEKCIYYPCKCPLFGCYFVASYELLSNHFSHKHGDSLIKFSYGNSFIVSLKSSDKVIVLQEKNNGKLFILNNNTLSMGNAINISCIGPKSSAICYCYDISARSDICSIKLESSTKNVQEVDLTTLSPEFLVIPFGCFGSSKILKLEIRINLKILLFKVESSGHNSYF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0989 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 139 IPR013083 -
Psa2g0989 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 10 260 IPR044286 -
Psa2g0989 277 SUPERFAMILY TRAF domain-like 86 243 - -
Psa2g0989 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 10 260 - -
Psa2g0989 277 Pfam Seven in absentia protein family 76 233 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa2g0989 277 ProSiteProfiles Zinc finger SIAH-type profile. 86 144 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0989 Psa-Chr2 75681025 75683122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0989 29 143 C3H Transcription Factor Family AT2G41980 29.060 5.77e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0989 K04506 - gmx:100778869 237.269