Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0988 ATGGAGCCATGCACGAAAGACTGTGTTAATTCCGAAGAAGATGTTACTAGTAAGGAGGATAACTCCGTTTCTGTTATTATTTCCAACCCAAAAGTTCTAGATTGTTGCAACTGTTTTCAACCTTTAACTATTCCACTCTTTCAGTGTGATAATGGTCATTTTGTTTGCTCTGCCTGCTGTCCTAAAATTTGGAACAAGTGTCCCAAGTGCTCAATTTGCATTAGCTCTAAACATTGTAAAGGTATTGAGAATATACTGCAAACTATGGAAATCTCATGTCCAAATGAAAAACATGGTTGCAGGGAGATAATAAGTTATAGTGGAAAGAGAAAGCATGAAGAAGAATGCATCTATGCACCATGTTACTGTCCCCTTTCAGGTTGTGACTTTGTTGCTTCATCAAAATTGTTTTCCAACCATTTCATTGATAAACATGGGGATTCACTTATCAAATTTTCTTATGGTCACTCTTTCAATGTATCCTTGAAGCCTAATGATAAAACCATTGTTCTTCAAGAGAAAAACAATGGCAAAATATTTATTCTCAATAATAGTACCATGCTTTTGGGAAATTCAGTCAATATTAGCTGCATTGGTCCTGACAGTTCTGAGGCTGAGTATGGTTGCTATATATTTGCTGGGTCCAAGAAATGCAGTCTAAAATTGTATTCTTTTTCGAAGAATGTCCATTGGGTTACTTTAGCAAGTCATTCATCAGAGTTTCTGGTGATTCCATCTTGTTATTTTGGTTCTTCTAAATGTGTGAAGCTAGAGATTTGCATAACCACCAAGATACAAATCTTTGTAAAAACTGTGAAGGGAAAGATGATGGCTCTGAAGGTTGAGAGTTCAGACACGATAGGCAGTGTGAAGGAGATTCTGATGGGCATGGAAGGGGTACCAGTGGACCATCAACGACTGATCTTTGGTAGTAAGAAACTAGATGACATCTGGACCATTGGGGATTACGACATTCAAGATAATTCAACCCTCCATCTCGTCCTTCTACTCCGTGGATGA 1020 0.3784 MEPCTKDCVNSEEDVTSKEDNSVSVIISNPKVLDCCNCFQPLTIPLFQCDNGHFVCSACCPKIWNKCPKCSICISSKHCKGIENILQTMEISCPNEKHGCREIISYSGKRKHEEECIYAPCYCPLSGCDFVASSKLFSNHFIDKHGDSLIKFSYGHSFNVSLKPNDKTIVLQEKNNGKIFILNNSTMLLGNSVNISCIGPDSSEAEYGCYIFAGSKKCSLKLYSFSKNVHWVTLASHSSEFLVIPSCYFGSSKCVKLEICITTKIQIFVKTVKGKMMALKVESSDTIGSVKEILMGMEGVPVDHQRLIFGSKKLDDIWTIGDYDIQDNSTLHLVLLLRG* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0988 339 SMART ubq_7 265 336 IPR000626 GO:0005515
Psa2g0988 339 SUPERFAMILY TRAF domain-like 91 262 - -
Psa2g0988 339 PRINTS Ubiquitin signature 275 295 IPR019956 -
Psa2g0988 339 PRINTS Ubiquitin signature 296 316 IPR019956 -
Psa2g0988 339 PRINTS Ubiquitin signature 317 338 IPR019956 -
Psa2g0988 339 SUPERFAMILY Ubiquitin-like 244 338 IPR029071 -
Psa2g0988 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 264 IPR044286 -
Psa2g0988 339 Pfam Ubiquitin family 267 337 IPR000626 GO:0005515
Psa2g0988 339 Pfam Seven in absentia protein family 82 160 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa2g0988 339 ProSiteProfiles Ubiquitin domain profile. 265 339 IPR000626 GO:0005515
Psa2g0988 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 264 - -
Psa2g0988 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 141 IPR013083 -
Psa2g0988 339 Gene3D - 259 339 - -
Psa2g0988 339 ProSiteProfiles Zinc finger SIAH-type profile. 88 146 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0988 Psa-Chr2 75623571 75624879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0988 265 339 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 60.000 9.60e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0988 K04506 - gmx:100778869 249.595