Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0987 ATGGCGATTCTGGGTCAAAAAGAAGGAATGGATTCTGTTATACATGTACACAAACTACTTGATCAATTTTCATGTGGAAATGACCATTCTTTGAAGGTAAGGAAACCATATACTATCACAAAGCAGAGAGAGAAGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGTATGGCCGAGCCTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTAATGGGAACGATATGACATTGGTGGAGTCAATTGAAATTCCACCTCCACGACCGAAGCGGAAGCCGATTCATCCTTACCCTCGTAAACTAGTAGAAATCCCAAAGAATGAAGTCTCCAACTTGGAACAGCCACTGAGGTCTAATTCTCTCGGGTCGTTAGATTTTGGTCAGGAAAACAACTCGCCCAAGTCGGTACTATCTGCAGTTGCTTCAGAGACCCTTGGTTTCTCAGATTCGGATTCCCCAACCAGAAGTTTGTCCCCTGTCTCGTCCCTTAGTGCCGTCCACACCAGTAGCATTCCACTTCTTGAAACCAAATCTTCATCGTCTGAGGAAGATATGTCTCTACAAATAGATGAACTGAATGCTGATTCAGCACATGATGAACAACCTATAATGAAACCTGAGCCTTTCTTGAAAGAATGCGTCGTTACCAACGACGAAGCAACAGAAGAATCACCTTGTCGAACTCTCAAACTTTTTGGAGCAACTCTACTAGTAAAAGATACGCGTGAACCTTCTTCTGCATCAATGGATGCATCCAAACTGATACCTGCCTTGCATAGTAAGCAGCAACTTCAGCGTGGAAGTTCAGATATTGGTGTTGCAACTGTTGTTCCTTGGTGGACTCTTTCCCACAATTCAGCCTTTAACAAAGAACCAGAGGAGAAACATCAACATTCAAATCACGGAGAATGTGAAGATAAGGAAATTCAAAAGGAAGGATCTTCTTGCGCTGGTTCTAATAGTACTAGTTCGATCAATGATGGAGAAAGCAATGAAAGATCGGAAGATCAAGCCAAAAGTGATAACGTGCATTACACTGTTGGCAAAAGTGAAACAGTGAGAGTTAGAACATTTGGGAAAGGGTTTGTACCATATAAAAGATGCATGGCAGAAAGAGAGAGCCATTGTTCAACAGTAAGTGATGAGAGGAGGGAACATCAACGTATGAGGCTTTCGTTATAG 1254 0.4211 MAILGQKEGMDSVIHVHKLLDQFSCGNDHSLKVRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTNGNDMTLVESIEIPPPRPKRKPIHPYPRKLVEIPKNEVSNLEQPLRSNSLGSLDFGQENNSPKSVLSAVASETLGFSDSDSPTRSLSPVSSLSAVHTSSIPLLETKSSSSEEDMSLQIDELNADSAHDEQPIMKPEPFLKECVVTNDEATEESPCRTLKLFGATLLVKDTREPSSASMDASKLIPALHSKQQLQRGSSDIGVATVVPWWTLSHNSAFNKEPEEKHQHSNHGECEDKEIQKEGSSCAGSNSTSSINDGESNERSEDQAKSDNVHYTVGKSETVRVRTFGKGFVPYKRCMAERESHCSTVSDERREHQRMRLSL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0987 417 CDD SANT 45 88 IPR001005 -
Psa2g0987 417 ProSiteProfiles SANT domain profile. 41 92 IPR017884 -
Psa2g0987 417 MobiDBLite consensus disorder prediction 314 374 - -
Psa2g0987 417 SMART sant 42 90 IPR001005 -
Psa2g0987 417 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 90 IPR006447 GO:0003677
Psa2g0987 417 ProSiteProfiles Myb-like domain profile. 38 88 IPR001005 -
Psa2g0987 417 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Psa2g0987 417 PANTHER SWI/SNF COMPLEX-RELATED 22 404 - -
Psa2g0987 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
Psa2g0987 417 MobiDBLite consensus disorder prediction 337 352 - -
Psa2g0987 417 MobiDBLite consensus disorder prediction 314 336 - -
Psa2g0987 417 PANTHER PROTEIN REVEILLE 7-RELATED 22 404 - -
Psa2g0987 417 Pfam Myb-like DNA-binding domain 43 86 IPR001005 -
Psa2g0987 417 Gene3D - 45 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0987 Psa-Chr2 75532308 75535987 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa2g0987 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0987 - - gmx:778060 470.314