Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0977 ATGGCACTGACCAACAACAATATTCTATACAGTTCTATCCTTAACACCAAGTTTCAATCTTGTGTTTTTGATGAGACAGCAATGGAGATTAACAATGTTATGCCTCGTGGTATCAATGAAGAAGAAGAAGAAGATGGTTCACAAAGCAATGAATCAGCTTCAGCTTCTACTCATTCTCCTACGCTATGTGATAATACCAAAAAAGGGTATGTTTATAACAATACAAGCTACGAACTTGAAGAAGATGAGTCTTTGATTAACTTCAAAGGTAATGATGATGAGTATTATGAGAATCTCATGCAAGGTAGTGAATCTTTGCTTAGCTTTCAGCAGAGCTGGAATATGGTCTCTAGTGACAACAGTTTGCAGCAATGGAATCATCTTAGTCCTAAAAGCATCACAAACTTGTGCATGGTTCAAGGTTTCAATAGCTTTGAAACTTCTAGTGGAAGCTACGGATCCATATTAAATAGTGCTAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGGTGGTTATATTCTGATCCAAATGTCCCTTGTGATGATGATGATAGGTTAATAAAAGAGTCGGAAACTCATGATTCTGTCGCGAAGAAGCGTTATTCTTCGATGGGAGAGAACATGCAACCTGCTAATGCAAAGAAGCCATGCACAAATGCAAGTAAAGCGGCGAAACCGAAGTCAAACCCATCCAAAGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGAATAAGTGAGAGACTCAAGATCCTACAAGAACTTGTTCCCAACGGTTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCAATTAGTTATGTGAAGTTTCTTCAATTGCAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCAGTGAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAACAAGCCATTGATGAAATTCTTTCATCTCAAAGATGA 954 0.3847 MALTNNNILYSSILNTKFQSCVFDETAMEINNVMPRGINEEEEEDGSQSNESASASTHSPTLCDNTKKGYVYNNTSYELEEDESLINFKGNDDEYYENLMQGSESLLSFQQSWNMVSSDNSLQQWNHLSPKSITNLCMVQGFNSFETSSGSYGSILNSAKEKQNGESSCGWLYSDPNVPCDDDDRLIKESETHDSVAKKRYSSMGENMQPANAKKPCTNASKAAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDEILSSQR* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0977 317 MobiDBLite consensus disorder prediction 205 236 - -
Psa2g0977 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Psa2g0977 317 MobiDBLite consensus disorder prediction 40 61 - -
Psa2g0977 317 Gene3D - 225 287 IPR036638 GO:0046983
Psa2g0977 317 SMART finulus 236 285 IPR011598 GO:0046983
Psa2g0977 317 CDD bHLH_AtIND_like 231 293 - -
Psa2g0977 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 288 IPR036638 GO:0046983
Psa2g0977 317 Pfam Helix-loop-helix DNA-binding domain 240 280 IPR011598 GO:0046983
Psa2g0977 317 MobiDBLite consensus disorder prediction 188 242 - -
Psa2g0977 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 41 310 - -
Psa2g0977 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 41 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0977 Psa-Chr2 74566045 74567861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0977 68 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.136 4.40e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g0977 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0977 - - gmx:106795957 353.984