Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0973 ATGGAGAATAAAAGAGGTGTGAGAAAAGGTGCATGGACATACGAGGAAGACAAGCTACTCAAGGCTTGCATTAACAAGTATGGTGAAGGAAAATGGCATTTAGTTTCTCAAAGAGCAGGATTGAATAGGTGCCGAAAAAGTTGTAGATTAAGGTGGTTAAATTATTTAAGCCCCGAGATCAACAGAGAAAGCTTTAGTGAAGATGAAGTTGATATGATCCTAAGATTGCACAAACTCCTAGGGAATAGATGGACATTGATTGCTGGAAGGCTTCCAGGTAGAACAGCTAATGATGTGAAGAATTATTGGCACACACACTTGCGCAGGAAAATGGTTCCCGAAAAATTAGAAGAAAAGGAAGAAAAAGAGAAACCAAAGGAAACCATGAAAACTCATGAAGTTATTAAACCTCAACCTAGAACTCTTTCATCTCATTCACATTGGTTGAATGAGAAAAATAATATTATGGTGAAACCAATAGGGACGGTTTCGACTAAAGAGGTTACTGCTGCGAAAGATCGTGATGACAAAGAGACTATGGTGACAAATCAAATTGGTAGAGATTGTGTTGATGCAATGTGGTGGGATAGTCTGTTGAACTTGGGGGAGCAAGAATGTGGTGAGAAAGAGGGATCATGCTCTTTATTTCAAGAAAACGTGATTCTAGAGTTGCCAAAAGTGGATGACTTCTTTTGGGATTCCAAGCTTTGTGATATCGGTTCTCTTTGGGATCTTTAG 738 0.3902 MENKRGVRKGAWTYEEDKLLKACINKYGEGKWHLVSQRAGLNRCRKSCRLRWLNYLSPEINRESFSEDEVDMILRLHKLLGNRWTLIAGRLPGRTANDVKNYWHTHLRRKMVPEKLEEKEEKEKPKETMKTHEVIKPQPRTLSSHSHWLNEKNNIMVKPIGTVSTKEVTAAKDRDDKETMVTNQIGRDCVDAMWWDSLLNLGEQECGEKEGSCSLFQENVILELPKVDDFFWDSKLCDIGSLWDL* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0973 245 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Psa2g0973 245 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Psa2g0973 245 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Psa2g0973 245 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Psa2g0973 245 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Psa2g0973 245 Gene3D - 63 137 - -
Psa2g0973 245 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 5 175 - -
Psa2g0973 245 CDD SANT 64 107 IPR001005 -
Psa2g0973 245 CDD SANT 11 56 IPR001005 -
Psa2g0973 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Psa2g0973 245 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 175 - -
Psa2g0973 245 MobiDBLite consensus disorder prediction 116 143 - -
Psa2g0973 245 SMART sant 61 109 IPR001005 -
Psa2g0973 245 SMART sant 8 58 IPR001005 -
Psa2g0973 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Psa2g0973 245 Gene3D - 2 62 - -
Psa2g0973 245 MobiDBLite consensus disorder prediction 116 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0973 Psa-Chr2 72690015 72691651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0973 2 199 MYB Transcription Factor Family AT1G66370 50.000 2.03e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g0973 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0973 - K16166 mtr:MTR_7g017260 297.745