Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0963 ATGCGGAGGAACAGTCCAGGTTACTACAGTCCTCCACGGAGAGGATACGGCGGAAGGGGGCCTAGTAGAAGAGGTTACGGTGGTGGTGGAGGAGGAGGTGGAGGTGGAGGTGGAGGTAGGCGCAGGGAAAGCAACAATGGAAGCCTTTTGGTGAGGAATATTCCTTTAGATTGTAGAGCTGAGGAACTTCGAGCTCCTTTTGAACGATTTGGACCTGTTCGTGATGTTTACATACCGAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTCGTTCAGTTTGTGGATTCATATGATGCCTCTGAGGCGCAGTACCATATGGACAGACAAATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGCAGAGACAAGAAAAAGGCCAGAGGAAATGAGGCATAGGACCGGTAGGCCCAGAGGACCAGGGAGCTATGGGGGGCAAAGGTCTTCCTACCATGGGCGTTCTCGATCTCGCTCAATTTCCAGATCAAGATCACCTCCTTATCACTCTGGGTCTAGAAATCGGTATCGATCAAGGTCCAGGTCCTTCTCTCCTCCCCCAAGACGTCAAGGTGACTACTCTGTTTCCCCTAGAAGGCATGTAGAACGACCTAGATCACCTAGAAGCCCTCCCAGAAGTCCTCCTGTGGAGCGAGATGGGGATCATAAACGCAGGTCGTATTCTCCAGCTTTTGACAATGGTGCTGATCAGGATCAAAGCAATGGATATGCAGAGAAATCTATGTACAAATCTGAGGCTGATCGAGGTCAGTGGAAGTCATCTGGACAAAGAACATCAAGATCACCCCCTGGATCTAGATCAAGATCTGCTGAATTGTCACCTAGACGTGGAAGATGA 864 0.4942 MRRNSPGYYSPPRRGYGGRGPSRRGYGGGGGGGGGGGGGRRRESNNGSLLVRNIPLDCRAEELRAPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTGRPRGPGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRNRYRSRSRSFSPPPRRQGDYSVSPRRHVERPRSPRSPPRSPPVERDGDHKRRSYSPAFDNGADQDQSNGYAEKSMYKSEADRGQWKSSGQRTSRSPPGSRSRSAELSPRRGR* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0963 287 MobiDBLite consensus disorder prediction 125 139 - -
Psa2g0963 287 MobiDBLite consensus disorder prediction 125 287 - -
Psa2g0963 287 MobiDBLite consensus disorder prediction 1 47 - -
Psa2g0963 287 SUPERFAMILY RNA-binding domain, RBD 43 153 IPR035979 GO:0003676
Psa2g0963 287 MobiDBLite consensus disorder prediction 234 248 - -
Psa2g0963 287 PANTHER OS02G0252100 PROTEIN 23 285 - -
Psa2g0963 287 MobiDBLite consensus disorder prediction 195 231 - -
Psa2g0963 287 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 285 - -
Psa2g0963 287 MobiDBLite consensus disorder prediction 150 191 - -
Psa2g0963 287 MobiDBLite consensus disorder prediction 256 277 - -
Psa2g0963 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Psa2g0963 287 Gene3D - 39 164 IPR012677 -
Psa2g0963 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Psa2g0963 287 SMART rrm1_1 48 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0963 Psa-Chr2 68905189 68908980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0963 29 109 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 1.65e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0963 K12900 - gmx:100804294 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0963 2 68905189 68908980 Psa2g0963 2 68905189 68908980 ECH