Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0960 ATGGCCAATGAATCTGAACCTGTAGCCTGTGAAGATGCAGTTCCGCCACAGAGAATTGGCAACAAGAGGGAGTATGAAGATGATGATCAGAAGGAAGTTATTACAAAGAAGAAGAAGACAGGCGAGGTTTTTGAAATCTTAGAGGATAAGGATGAAACTAATTCAGATTGTTATGAACATGACAAGAAACTTAAAGCTAAAATCGAATCTGATACCAGTCACGGATCTTTGGAATCATTTGATGACGGTGTCTCAGATCCTAACTCTAATGAAGACAATCCCAAAGATTTGGAGAGTCCTGAGGGAAATGAGGAAGAAGTAGAGGGAAAAGTCTCTAAAACACCTCAGGAAAGGCATGGAACTCCAGTCACTCTAAATGAAAAATATGATGCATTGAAAACAATATGTGTTAGAAACTTGTCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGGTTGTGGTGAAGTTGTTGATATCCAGTTCATAACAGATTGCGAAGGGAGGTTTAGAGGCTTTGGATTTGTCAAATTTGGAACAGTAGAAGCAGCAGAAAAAGCCCTCAAATTGCATAATACAGAATTATTGAATCGCCACATAAAAGTTGACATAGCTCGGGATAAGAGTGAATATCCCCCCTATAGAAGTTCATTTCATACGGGTGGAAATCTTCACTCTCACACTGTAAAGGGTTTTGACGCATCTCTTGTAGAAAACAAGCCTAAAAGCCCAGTTACACCAAATGAAACAAAGGGTACATCAAAGACAGTATATGTCGGAAACTTGTCATACACCGTAGAACGAGCTGATATGGAAAAACTTTTCAAAGATTATGGGGAAATCGTTGATGTTCGTCTCCATACAGACTGCCAAGGGAAGTTTATAGGCCATGCACATGTTCAGTTTGCAACAGAAGAAGCAGCACAAAAGGCTCTTGCGTTGAATAAGAAAGAATTTTTTAACCGGCCCATGGTTGTTAATTTAGCTTTGGAAAGGCGTAAATATTCCCCCAACAGAAGGTAA 1029 0.3936 MANESEPVACEDAVPPQRIGNKREYEDDDQKEVITKKKKTGEVFEILEDKDETNSDCYEHDKKLKAKIESDTSHGSLESFDDGVSDPNSNEDNPKDLESPEGNEEEVEGKVSKTPQERHGTPVTLNEKYDALKTICVRNLSYSVERADMEDIFKGCGEVVDIQFITDCEGRFRGFGFVKFGTVEAAEKALKLHNTELLNRHIKVDIARDKSEYPPYRSSFHTGGNLHSHTVKGFDASLVENKPKSPVTPNETKGTSKTVYVGNLSYTVERADMEKLFKDYGEIVDVRLHTDCQGKFIGHAHVQFATEEAAQKALALNKKEFFNRPMVVNLALERRKYSPNRR* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0960 342 MobiDBLite consensus disorder prediction 67 123 - -
Psa2g0960 342 SUPERFAMILY RNA-binding domain, RBD 125 225 IPR035979 GO:0003676
Psa2g0960 342 SMART rrm1_1 258 329 IPR000504 GO:0003723
Psa2g0960 342 SMART rrm1_1 134 205 IPR000504 GO:0003723
Psa2g0960 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 326 IPR000504 GO:0003723
Psa2g0960 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 203 IPR000504 GO:0003723
Psa2g0960 342 Gene3D - 228 341 IPR012677 -
Psa2g0960 342 Gene3D - 20 215 IPR012677 -
Psa2g0960 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 209 IPR000504 GO:0003723
Psa2g0960 342 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 85 332 - -
Psa2g0960 342 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 85 332 - -
Psa2g0960 342 MobiDBLite consensus disorder prediction 17 33 - -
Psa2g0960 342 MobiDBLite consensus disorder prediction 1 33 - -
Psa2g0960 342 SUPERFAMILY RNA-binding domain, RBD 246 340 IPR035979 GO:0003676
Psa2g0960 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 333 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0960 Psa-Chr2 68866414 68873512 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0960 116 331 Eukaryotic Initiation Factors Gene Family AT1G34140 27.602 1.72e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0960 - K11294 mtr:MTR_1g036430 406.757