Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0958 ATGGCTATAATCTCCCTCAAAACTCTCTTCTCTCCTCCAATTCCCCAAATTCAAGCTGGAATGGCCAATGAATCTGAACCTGTAGTCTGTGAAGATGCAATTCCGCCACAGAAAATTTGCAAAAAGAGGAAGTGTGAAGATGAAGATCAGAATGAAGTTATTACAGAGAAGAAGAAGAGAGGCGAGGTTTTTGAAATCTTAGAGGATAGGGTTGGAAGTAATTCAGATTATTCTGAACATGACAAGCCCGAAGGTTTGGAGAGTCTCGAGTACAATGAGGAAGAAGTAGAGGGAAAAGTCTCTAAAACACCTCAGGAAAGGCATGGATCTCCAGTCACTCTAAATGAAAATTATGCTGCATCGAAGACAATATGTGTTAAAAACTTGTCATATAGTGTGGAACATACTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTGGTTGATATCCAATTCAAAACAGATTGTGAAGGAAGGTTTAGAGGCTTTGGTTTTGTCAAATTTGAAACAGTAGAAGCAGCACAAAAAGCCCTCAAGTTGCATAATACAGAATTATTGAATCGCCGCATCAAAATTAACATAGCTCAGGAAAAGAGTGAATATCCTCCCTGTAGAAGTTGGAGCAGTTCATTTCATACGGATGGAAATCTTTACTCTCACACTGTAAAGGGTTTTGACGCATCTCTTGTAGAAAACAAGCCTAAAAGCCCAGTTACACCAAATGAAACAAAGGGTACATTGAAGACAGTATATGTCGGAAATTTGTCATATACCGTAGAACGAGCTGATATGGAAAAACTTTTCAAAGGTTATGGGGAAATTGTTGATATTCGTCTCCATACAGACCGCGAAGGGAAATTTAAAGGAAATGGACATGTTCAGTTTGCAACAGAAGAGTCAGCACAAAAGGCTCTTGTGTTGAATAAGAAAGTTTCTTTTAACCGTCCCATGGTTGTTAATTTAGCTTTGGAAAGGCGTAAATATTCCCCCAATGAAAGCTGGAGCATCCAATTCCACAAGTGCGGAAATTTTCAGCCTCCTCTAACTGTATCTGTAATTGGATTTAATACATCCCTTGCCGAAGAGAAGATAAAAGCTAGCTTGCACAATCATTTCGAATGTTGTGGAGAGATTGCAAGGATCTTATTACCAAGACATCATGGTTCTGGTGTTATTAAGGAGCATGCTTTTTTGGATTTCAAGGATATTGATGGCTATAAGAATGCACTAAAACTTAATCAAACTGAGATAGGAGGTTATTGGGTGTCAGTTGTAAGCGCAGGCGGTGGGAAAGGTAACTATCGCGTCGGTGGAAGGGGTGGAGGAGACTATGGTGGTAGCAGAGGTGGCTATCGCATAGGTGGAAGGGATGGAGCAAATTATAGAAGTGATAATCAAGGTATGGGTGGTGGCAGAGGTAGCTATCACGTCTGTGGAAGGGGTGGAGGAGACTGTGGTGGTAGAGCAAGTTGGGGGAGAAGTCATGGTGCTGAGAGGCACTGGACAGTCAATACCGAGCACTGGTGA 1530 0.4105 MAIISLKTLFSPPIPQIQAGMANESEPVVCEDAIPPQKICKKRKCEDEDQNEVITEKKKRGEVFEILEDRVGSNSDYSEHDKPEGLESLEYNEEEVEGKVSKTPQERHGSPVTLNENYAASKTICVKNLSYSVEHTDMEDIFKDCGEVVDIQFKTDCEGRFRGFGFVKFETVEAAQKALKLHNTELLNRRIKINIAQEKSEYPPCRSWSSSFHTDGNLYSHTVKGFDASLVENKPKSPVTPNETKGTLKTVYVGNLSYTVERADMEKLFKGYGEIVDIRLHTDREGKFKGNGHVQFATEESAQKALVLNKKVSFNRPMVVNLALERRKYSPNESWSIQFHKCGNFQPPLTVSVIGFNTSLAEEKIKASLHNHFECCGEIARILLPRHHGSGVIKEHAFLDFKDIDGYKNALKLNQTEIGGYWVSVVSAGGGKGNYRVGGRGGGDYGGSRGGYRIGGRDGANYRSDNQGMGGGRGSYHVCGRGGGDCGGRASWGRSHGAERHWTVNTEHW* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0958 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 198 IPR000504 GO:0003723
Psa2g0958 509 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 345 457 - -
Psa2g0958 509 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 74 330 - -
Psa2g0958 509 SUPERFAMILY RNA-binding domain, RBD 112 214 IPR035979 GO:0003676
Psa2g0958 509 SUPERFAMILY RNA-binding domain, RBD 347 456 IPR035979 GO:0003676
Psa2g0958 509 MobiDBLite consensus disorder prediction 71 104 - -
Psa2g0958 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 325 IPR000504 GO:0003723
Psa2g0958 509 MobiDBLite consensus disorder prediction 71 110 - -
Psa2g0958 509 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 345 457 - -
Psa2g0958 509 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 74 330 - -
Psa2g0958 509 SUPERFAMILY RNA-binding domain, RBD 238 341 IPR035979 GO:0003676
Psa2g0958 509 Gene3D - 220 334 IPR012677 -
Psa2g0958 509 Gene3D - 40 203 IPR012677 -
Psa2g0958 509 SMART rrm1_1 123 194 IPR000504 GO:0003723
Psa2g0958 509 SMART rrm1_1 250 321 IPR000504 GO:0003723
Psa2g0958 509 SMART rrm1_1 350 426 IPR000504 GO:0003723
Psa2g0958 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Psa2g0958 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 362 421 IPR000504 GO:0003723
Psa2g0958 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 317 IPR000504 GO:0003723
Psa2g0958 509 Gene3D - 343 499 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0958 Psa-Chr2 68796078 68804362 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0958 124 363 Eukaryotic Initiation Factors Gene Family AT1G34140 25.926 8.07e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0958 - K11294 mtr:MTR_1g036430 384.8