Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0951 ATGAGAAAGCCTTGTTGTGACAAAGAAAACATCAATAAAGGTGCTTGGTCTAAGCAAGAAGATCAAAAGCTTATTGATTATATACAAGTTCATGGTGAAGGATGTTGGGGATCCATTCCTAAAGCTGCTGGGTTGTATCGTTGTGGCAAAAGTTGTAGACTAAGATGGTTAAACTACTTACGACCAGATATCAAACGTGGAATCTTTGATCAAGATGAAGAAGATCTCGTCATTAAACTACATGCCCTCCTTGGCAATCGGTGGGCACTCATTGCTGGAAGATTGCCAGGACGTACAGATAATGAGGTGAAGAACTATTGGAATTCTCATATTCGTAGAAAGCTCATAAAAATGGGAATTGATCCAAATAATCACAAGCTACACAAAGGCTTACCTAGTATTAATCCTCATGTTTCTAATGCTGGCACATCATCAATATGTGACGAGTCCATGAACAAAGATATCAATAATAATAGTAATAATAAACTCTCCTTCAACAAATCGTTTGATGCTATGAGAAAGATAGAAGCATCGAAAAATAATTCTTCGTCCTCTTTGAATCTTGACTTAACCATTGCTTTACCTTCAAAGGATTGCGAGTCTCAGAGGACTAGAGATATGGATACGGCTACGGATATTGATCTTAATTGTTAA 654 0.3716 MRKPCCDKENINKGAWSKQEDQKLIDYIQVHGEGCWGSIPKAAGLYRCGKSCRLRWLNYLRPDIKRGIFDQDEEDLVIKLHALLGNRWALIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHKGLPSINPHVSNAGTSSICDESMNKDINNNSNNKLSFNKSFDAMRKIEASKNNSSSSLNLDLTIALPSKDCESQRTRDMDTATDIDLNC* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0951 217 SMART sant 65 113 IPR001005 -
Psa2g0951 217 SMART sant 12 62 IPR001005 -
Psa2g0951 217 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Psa2g0951 217 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Psa2g0951 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Psa2g0951 217 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Psa2g0951 217 CDD SANT 15 60 IPR001005 -
Psa2g0951 217 CDD SANT 69 111 IPR001005 -
Psa2g0951 217 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Psa2g0951 217 PANTHER MYB TRANSCRIPTION FACTOR 2 207 - -
Psa2g0951 217 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 207 - -
Psa2g0951 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Psa2g0951 217 Gene3D - 68 131 - -
Psa2g0951 217 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Psa2g0951 217 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0951 Psa-Chr2 67993704 67995192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0951 2 196 MYB Transcription Factor Family AT4G09460 51.707 1.09e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g0951 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0951 K09422 - gmx:100306391 295.819