Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0945 ATGACTAAGCTCAACATCATCGCCATTGTCACCCTCTTATCCCTTCTTCTCACTTCAACCCAAGCCACACTCCCCGGCGTCTATCCCGGAGGAGCATGGCAAACCGCCCACGCCACCTTCTACGGCGGCAACGACGCCTCCGGAACAATGGGAGGCGCGTGTGGTTACGGGAATTTATACAGTCAAGGCTACGGCGTGAACACGGCGGCATTGAGCACCGCACTATTCAACAACGGCTTAAGCTGCGGCGCGTGTTTTGAAATAAAGTGTGCGAATGATCCTAGCTGGTGCCACGCTGGCAATCCTTCAATATTAGTAACTGCAACAAATTTTTGTCCACCAAATTACGCATTACCAAGTGATAATGGTGGTTGGTGTAATCCTCCACGTCCACACTTCGACCTCGCTATGCCTATGTTTCTCAAAATCGCCCAGTATCGCGCCGGCATTGTTCCCGTCTCTTACCGCCGGGTATCTTGCAGGAAGCAAGGAGGGATAAGATTCACGATCAACGGATTTCGTTACTTTAATTTGGTTTTAATCACCAACGTTGCGGGTGCAGGGGATATCGTGAAGACGAGTGTGAAAGGTTCGAAAACTGGTTGGTTGAGTATGAGTCGTAACTGGGGGCAAAATTGGCAATCAAATGCTGTTTTGGTTGGTCAGACACTATCTTTTAAGGTGACAGCAAGTGACAAACGCACTTCCACTTCTTGGAATGTTGTTCCTTCTAATTGGCAGTTTGGTCAAACTTTCAGTGGCAAGAATTTTTAA 774 0.4832 MTKLNIIAIVTLLSLLLTSTQATLPGVYPGGAWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPSWCHAGNPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVSCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKTSVKGSKTGWLSMSRNWGQNWQSNAVLVGQTLSFKVTASDKRTSTSWNVVPSNWQFGQTFSGKNF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0945 257 SMART dpbb_1 68 155 IPR007112 -
Psa2g0945 257 Gene3D - 165 257 IPR036749 -
Psa2g0945 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Psa2g0945 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Psa2g0945 257 PANTHER EXPANSIN-A15 8 257 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Psa2g0945 257 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Psa2g0945 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Psa2g0945 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Psa2g0945 257 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Psa2g0945 257 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Psa2g0945 257 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Psa2g0945 257 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
Psa2g0945 257 Gene3D - 21 161 IPR036908 -
Psa2g0945 257 Pfam Lytic transglycolase 68 155 IPR009009 -
Psa2g0945 257 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Psa2g0945 257 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Psa2g0945 257 PANTHER EXPANSIN-A4 8 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0945 Psa-Chr2 67373155 67374554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0945 7 257 Expansin Gene Family AT2G39700 82.869 3.15e-161 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0945 - - gmx:100803242 491.5