Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0943 ATGGGTAAGAAAAACAAACCAAGGAACGAAAATGGCGACGGCACCTTAAAACAATCCCCCTTGACTCTCTTTGTTTCCAACTTACCCTACTCCTTTACAAACCCTCAGCTTGAGGAAACTTTCAGTGAAGTTGGACCTGTTAGGCGATGCTTCATGGTAACACAAAAGGGCTCTACTCAACATCGTGGTTTTGGTTATGTCCAATTTGCTGTTGAGGCAGACGCTAACAGTGCCATTGAGCTGAAGAACGGTTCATTGGTTGGTGGCCGAAAAATTGCAGTGAAGCACGCAATGCCCCGTCCTCCCCGTGAAAATAGAAGATTGAAACCAGATCAAGAGGGCAAGGAGGATGATCTCATAGAGTCAAAAAATGACGATAAAGGCAGTGGATTACCCGTAGCAGAGAAGCCTGTTCCAGTTCCAAAGGAAGAAGAAGCGATAGTTTTGAATAAACAAAAAAACTCAAGGAAGCCTGTGGAAATAAAAAAAGCAGCTCTTTGTAATAATGTAGCAGATGAGGGGGGTGGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATGAATTCTGCCATGACTGAAGATGTTCACCGTCAAGCCAAAGATATTGGCACTGTGTGCTCTATTAAGTCTCTCTCAAGGAATGATCTTCAGCAACATGGTCTTCTGCAAGATGGCTGTACTTTGGATGCTTCAGCTGTACTATATACTAGTGTAAAATCAGCTCGTGCTTCTGTTGCAACATTGCATAAAAAAGAGATAGGAGGCGGAACTGTTTGGGCACGCCAACTTGGTGGCGAGGGATCCAAGACTCAAAAATGGAAGCTCATTGTTAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATAAGTGACGTGTTTTCATCTGCGGGGCCTGTATGGGAGGTATTCATTCCACAGAAGTCCGACACAGGTCTTTCAAAGGGTTTCGCGTTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTCGAAAGCTCAATGGATCGAAGTTTGGGAGTCGTCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGATGCTCCTGCTTCAGAGGAAGGACAACAAAAGGCGACAGATGAAGATGGTAGTACTACTACAGATGATGATGTTGAGGATACCGTCAAACAATCTGATGAAGGAGATGATAGTGATGTTGATGGTGTAGTGGAGGAAGATGTTCCTTCTGAAGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAATTTGATTACATCCTCCTCTGCCAGAGATGCATCTGTAAATCCAGATTCTATGTGTTCCGAAGAAAATAAGGAGCCAAAATCTGAGGAAACTGTTAAGGATGCCGATAGTAAAGTGCCTAAAGAGTCTGACAAAGTTTTAGCTACTTCTAAGCCCGAGACTTCCAGCAGGTTATCTAATCCTAAGGAAACAGAAGATGATTTGCAAAGAACAATTTTTATAAATAATCTTCCCTTTGAATGTGATACCGAAGAAGTGAAGCAACGATTTTCTGCATTTGGAGTAGTAGAATATTTTGCTCCTGTTCTCCACCCATTGACCAAGCGTCCACGAGGGACTGGTTTTCTCAAATTTAAAACCGTTGAAGCAGCTAATGCTGCAATTTCAACTGCCAATGCTGCTTCTGGGATGGGTATTTTAGTGAAGGGTAGACCATTAAAAGTCTTGAAAGCTCTGGACAAGAAAACAGCTCATGACAAGGAACAGGAGAAAGAAAAAAACGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGGACTCCAGCTGCTGAAGGAGTTTCAGCCAGTGATATGGCAAAACGCAAAGAATTAGAAAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCCAAGTCAAAGACTGAAAAACAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTGATTCGGCAGATTAAGCTTTTGAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAACAGTATTCCCGTGGAGTCGCCTTTCTTGAATTTTCAGAACACCAGCACGCCCTTGTTGCATTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACATCGGCCGATTGTGGAGTTTGCTCTTGATAATGTTCAGACATTGAAACTTCGGAAGGAAAAGCTACAATATCAGCAGCAGGCTCCTTATGATGACAACAACAGAAATGAAAATGATAAACCCGACAACGCAGGAGGAGGTTATGCACATGGAAAGGACAGAAAACGAAAATCTCAAGAGCATGAGAAACCCGCAAATGAGAGTGAAGGAGACGCTAAAGTAAATGGAAAATCTCCTCAAGGAGGTAAATTCAAAAGACAGAAAGACAACCCCAAGAGTACAAATACCGAGGAGTTATCATCCAGAGGAAGTCCAAAAGATTCTTCGATCAGGAAGTTAACGAATAACCATGATGGCCGGAATCATGGTAAAAATAGTGCCATTGACAGTAGTATTGGAAAAAAGTCAGGAAAGAAAGATGATGCTGTATATGGAAAAAGGAAGATGCAAAACCAAGAACAGGCCGGGGAACAGGTTTCTAGGAAAAGGACAAGGAAGAATAAAGATTCAGTAGGAAAGGACACCGTAGATAGGCTTGACATGCTTATAGAACAGTATAGATCCAAGTTCTCAAACAAGGGTTCCGAAGGAAATGACGGTGAGAAAAAACAATCTAAACAGCTTAGGAAATGGTTCCAAACATAA 2862 0.4165 MGKKNKPRNENGDGTLKQSPLTLFVSNLPYSFTNPQLEETFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEADANSAIELKNGSLVGGRKIAVKHAMPRPPRENRRLKPDQEGKEDDLIESKNDDKGSGLPVAEKPVPVPKEEEAIVLNKQKNSRKPVEIKKAALCNNVADEGGGSEKQRVARTVIFGGLMNSAMTEDVHRQAKDIGTVCSIKSLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEISDVFSSAGPVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKATDEDGSTTTDDDVEDTVKQSDEGDDSDVDGVVEEDVPSEDDFDKEADIARKVLNNLITSSSARDASVNPDSMCSEENKEPKSEETVKDADSKVPKESDKVLATSKPETSSRLSNPKETEDDLQRTIFINNLPFECDTEEVKQRFSAFGVVEYFAPVLHPLTKRPRGTGFLKFKTVEAANAAISTANAASGMGILVKGRPLKVLKALDKKTAHDKEQEKEKNEVHDHRNLYLAKEGLILEGTPAAEGVSASDMAKRKELERKKKTKLQSPNFHVSKTRLVIYNLPKSKTEKQLKKLCIDAVISRATKQKPVIRQIKLLKDGRKGKATQEQYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKEKLQYQQQAPYDDNNRNENDKPDNAGGGYAHGKDRKRKSQEHEKPANESEGDAKVNGKSPQGGKFKRQKDNPKSTNTEELSSRGSPKDSSIRKLTNNHDGRNHGKNSAIDSSIGKKSGKKDDAVYGKRKMQNQEQAGEQVSRKRTRKNKDSVGKDTVDRLDMLIEQYRSKFSNKGSEGNDGEKKQSKQLRKWFQT* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0943 953 MobiDBLite consensus disorder prediction 373 391 - -
Psa2g0943 953 MobiDBLite consensus disorder prediction 785 809 - -
Psa2g0943 953 MobiDBLite consensus disorder prediction 392 419 - -
Psa2g0943 953 CDD RRM2_RBM28_like 279 355 - -
Psa2g0943 953 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 10 371 - -
Psa2g0943 953 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 478 768 - -
Psa2g0943 953 SUPERFAMILY RNA-binding domain, RBD 501 731 IPR035979 GO:0003676
Psa2g0943 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Psa2g0943 953 MobiDBLite consensus disorder prediction 835 849 - -
Psa2g0943 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 349 IPR000504 GO:0003723
Psa2g0943 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Psa2g0943 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 564 IPR000504 GO:0003723
Psa2g0943 953 CDD RRM4_RBM28_like 653 750 - -
Psa2g0943 953 Gene3D - 434 598 IPR012677 -
Psa2g0943 953 Gene3D - 2 110 IPR012677 -
Psa2g0943 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 584 IPR000504 GO:0003723
Psa2g0943 953 MobiDBLite consensus disorder prediction 451 479 - -
Psa2g0943 953 SUPERFAMILY RNA-binding domain, RBD 274 359 IPR035979 GO:0003676
Psa2g0943 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 653 766 IPR000504 GO:0003723
Psa2g0943 953 PANTHER RNA BINDING PROTEIN 10 371 - -
Psa2g0943 953 PANTHER RNA BINDING PROTEIN 478 768 - -
Psa2g0943 953 Gene3D - 265 392 IPR012677 -
Psa2g0943 953 MobiDBLite consensus disorder prediction 362 422 - -
Psa2g0943 953 Gene3D - 652 747 IPR012677 -
Psa2g0943 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 356 IPR000504 GO:0003723
Psa2g0943 953 Coils Coil 744 764 - -
Psa2g0943 953 SUPERFAMILY RNA-binding domain, RBD 20 264 IPR035979 GO:0003676
Psa2g0943 953 MobiDBLite consensus disorder prediction 872 886 - -
Psa2g0943 953 MobiDBLite consensus disorder prediction 764 953 - -
Psa2g0943 953 SMART rrm1_1 279 352 IPR000504 GO:0003723
Psa2g0943 953 SMART rrm1_1 22 95 IPR000504 GO:0003723
Psa2g0943 953 SMART rrm1_1 502 580 IPR000504 GO:0003723
Psa2g0943 953 SMART rrm1_1 654 745 IPR000504 GO:0003723
Psa2g0943 953 MobiDBLite consensus disorder prediction 94 139 - -
Psa2g0943 953 CDD RRM1_RBM28_like 22 100 - -
Psa2g0943 953 MobiDBLite consensus disorder prediction 439 496 - -
Psa2g0943 953 CDD RRM3_RBM28_like 501 582 - -
Psa2g0943 953 MobiDBLite consensus disorder prediction 97 130 - -
Psa2g0943 953 MobiDBLite consensus disorder prediction 933 947 - -
Psa2g0943 953 MobiDBLite consensus disorder prediction 897 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0943 Psa-Chr2 67351792 67360259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0943 282 357 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 2.91e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0943 K14573 - gmx:100794821 1266.91