Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0898 ATGTTGGTGAATGAGGAGGACAAGTTTCATGTTGTGGAGATAGAGAACAATGGTTGTCACCGGAGTAGCGAGGGTGACTCCGGTGACAGGTCAGATGAGGAAGAAGTGAAAAGGTCAGAGATTGTGGGAGTGGATGAGAAACAAAGAGGCTCCACTGATTCATCAGATGAATCTGTGGAGTTGGATCTGGATGGTGTTGTGGTAGCTTGTGATGTTGATGTTAAGGTGCATTTGGATAAGGTGGAGAGAGATTGTAGGATTTGTCATCTTAGTATGGATATGACAAATCATGAATCTGGGATTCCTATGGAGCTTGGATGCTGTTGTAAAGAGGATTTGGCTGCTGCTCATAAACATTGTGCTGAGGCTTGGTTCAAGATTAAGGGAAACAAAACTTGTGAAATCTGTGGATCAGTAGCACACAATGTAGCTGGTGCTTTTGAAGTTCAAACGACAGAACAGTTGAATGAAGCAAGTGATCCCTCTATGGTACTACCAACTGGACCTTCACCGCCAATCGAAACTCGAAATTTTTGGCAGGGACACCGGTTTTTGAATTTTCTTCTAGCATGTATGGTGTTTGCATTTGTTATATCATGGCTTTTTCACTTTAATGTCCCCTCTTGA 627 0.4274 MLVNEEDKFHVVEIENNGCHRSSEGDSGDRSDEEEVKRSEIVGVDEKQRGSTDSSDESVELDLDGVVVACDVDVKVHLDKVERDCRICHLSMDMTNHESGIPMELGCCCKEDLAAAHKHCAEAWFKIKGNKTCEICGSVAHNVAGAFEVQTTEQLNEASDPSMVLPTGPSPPIETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0898 208 MobiDBLite consensus disorder prediction 14 56 - -
Psa2g0898 208 Pfam RING-variant domain 85 136 IPR011016 GO:0008270
Psa2g0898 208 SMART ringv_2 84 137 IPR011016 GO:0008270
Psa2g0898 208 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 208 - -
Psa2g0898 208 MobiDBLite consensus disorder prediction 14 57 - -
Psa2g0898 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 145 IPR013083 -
Psa2g0898 208 SUPERFAMILY RING/U-box 82 140 - -
Psa2g0898 208 ProSiteProfiles Zinc finger RING-CH-type profile. 77 143 IPR011016 GO:0008270
Psa2g0898 208 PANTHER ZINC FINGER, RING-CH-TYPE 10 208 - -
Psa2g0898 208 CDD RING_CH-C4HC3_MARCH 85 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0898 Psa-Chr2 58294874 58297562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0898 24 208 C3H Transcription Factor Family AT5G05830 57.527 9.59e-70 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0898 - - mtr:MTR_5g081560 317.39