Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0877 ATGAAATGGCTTAGTAAGCTTTTCAAAGGCGGGCCTAATAGAGGAAGGAGCGGTCGTCATCTTCACGACTCTTCAGAGGAAAGTGTGTCTTGGCGTGCTCCATCTAGAGCTTTGGATGATCGTGGTAGAGCTCAAAAGGAGAAAGAGGATTTGGGCCATGCAATGTCACTTTCTTCATCTGAAGATATGAAGAGACCAAATGCTCATCAAGGATATAGGTGGGGGGAAGGAAATGGTGAAGATTATGGAAAGGGACTTCATGATAACTTTAACTCATCTGCACACCCTCCGTATGCTCCGGCGCCATTTTATCCTAACGAATATAGAAGAATATGCGGCGGCTGCAACCAGGAGATAATCTATGGAAATTGTTTAGGTTGCATGGATACTTATTTTCATCCAGACTGCTTTCGATGCCACTCGTGTCGCTATCCCATCACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCTTGTTTTAAAGAGTTGACTCAACCGAAATGTGAAGTTGCTTCCAGTTTATTCCAATAA 543 0.4401 MKWLSKLFKGGPNRGRSGRHLHDSSEESVSWRAPSRALDDRGRAQKEKEDLGHAMSLSSSEDMKRPNAHQGYRWGEGNGEDYGKGLHDNFNSSAHPPYAPAPFYPNEYRRICGGCNQEIIYGNCLGCMDTYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTQPKCEVASSLFQ* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0877 180 ProSitePatterns LIM zinc-binding domain signature. 112 146 IPR001781 -
Psa2g0877 180 Pfam LIM domain 112 166 IPR001781 -
Psa2g0877 180 ProSiteProfiles LIM domain profile. 110 170 IPR001781 -
Psa2g0877 180 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 176 - -
Psa2g0877 180 MobiDBLite consensus disorder prediction 16 55 - -
Psa2g0877 180 CDD LIM_DA1 112 164 - -
Psa2g0877 180 Gene3D Cysteine Rich Protein 107 178 - -
Psa2g0877 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 137 - -
Psa2g0877 180 SMART lim_4 111 163 IPR001781 -
Psa2g0877 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 174 - -
Psa2g0877 180 MobiDBLite consensus disorder prediction 1 66 - -
Psa2g0877 180 PANTHER PROTEIN DA1-RELATED 2 1 176 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0877 Psa-Chr2 56661835 56663021 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa2g0877 LIM 3e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0877 - - gmx:100784976 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0877 2 56661835 56663021 Psa2g0877 2 56661835 56663021 ECH