Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa2g0877 | ATGAAATGGCTTAGTAAGCTTTTCAAAGGCGGGCCTAATAGAGGAAGGAGCGGTCGTCATCTTCACGACTCTTCAGAGGAAAGTGTGTCTTGGCGTGCTCCATCTAGAGCTTTGGATGATCGTGGTAGAGCTCAAAAGGAGAAAGAGGATTTGGGCCATGCAATGTCACTTTCTTCATCTGAAGATATGAAGAGACCAAATGCTCATCAAGGATATAGGTGGGGGGAAGGAAATGGTGAAGATTATGGAAAGGGACTTCATGATAACTTTAACTCATCTGCACACCCTCCGTATGCTCCGGCGCCATTTTATCCTAACGAATATAGAAGAATATGCGGCGGCTGCAACCAGGAGATAATCTATGGAAATTGTTTAGGTTGCATGGATACTTATTTTCATCCAGACTGCTTTCGATGCCACTCGTGTCGCTATCCCATCACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCTTGTTTTAAAGAGTTGACTCAACCGAAATGTGAAGTTGCTTCCAGTTTATTCCAATAA | 543 | 0.4401 | MKWLSKLFKGGPNRGRSGRHLHDSSEESVSWRAPSRALDDRGRAQKEKEDLGHAMSLSSSEDMKRPNAHQGYRWGEGNGEDYGKGLHDNFNSSAHPPYAPAPFYPNEYRRICGGCNQEIIYGNCLGCMDTYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTQPKCEVASSLFQ* | 181 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa2g0877 | 180 | ProSitePatterns | LIM zinc-binding domain signature. | 112 | 146 | IPR001781 | - | |
Psa2g0877 | 180 | Pfam | LIM domain | 112 | 166 | IPR001781 | - | |
Psa2g0877 | 180 | ProSiteProfiles | LIM domain profile. | 110 | 170 | IPR001781 | - | |
Psa2g0877 | 180 | PANTHER | TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED | 1 | 176 | - | - | |
Psa2g0877 | 180 | MobiDBLite | consensus disorder prediction | 16 | 55 | - | - | |
Psa2g0877 | 180 | CDD | LIM_DA1 | 112 | 164 | - | - | |
Psa2g0877 | 180 | Gene3D | Cysteine Rich Protein | 107 | 178 | - | - | |
Psa2g0877 | 180 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 107 | 137 | - | - | |
Psa2g0877 | 180 | SMART | lim_4 | 111 | 163 | IPR001781 | - | |
Psa2g0877 | 180 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 138 | 174 | - | - | |
Psa2g0877 | 180 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
Psa2g0877 | 180 | PANTHER | PROTEIN DA1-RELATED 2 | 1 | 176 | IPR045218 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa2g0877 | Psa-Chr2 | 56661835 | 56663021 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Psa2g0877 | LIM | 3e-08 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa2g0877 | - | - | gmx:100784976 | 318.546 |