Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa2g0830 | ATGGATGTGATAAAAACGCAACAAATTTCATGGAGAGCCATAGAAAAAGTCGTAGTTCACCCTTTAGTTTTGCTTAGCATAGTCGATAACTACAACAGAGTCGCCAAAGACACTCGCAAACGCGTCGTCGGCGTCTTGCTCGGTTCCTCCTTCAAAGGCACCGTTGATATCACCAACAGCTACGCCGTGCCTTTTGAAGAAGACGAAAAGGATCCTAGCATTTGGTTTCTCGATCATAACTATCATGAATCAATGTTCTCCATGTTTAAGAGAATCAATGCTAAGGAGCACGTTGTAGGGTGGTATAGTACTGGACCAAAACTGCGAGAAAATGACCTTGACATTCATGGTTTATTCAATGACTATGTTCCAAATCCTGTTTTGGTTATAATTGATGTCGAACCTAAGGAGCTAGGAATTCCTACTAAAGCTTACTATGCTGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCAATCTGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTTGAGCACTTGCTTAGAGATGTAAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTCAAAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTTTACCATTTGCAGGACGTATTCAACCTGCTGCCAAATCTTAATGTCACTGATTTGATCAAGGCTTTTGCAGTGAAAACTAATGATATGATGCTAGTAATATACCTATCGTCCCTCATCAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGAAGAAGACTCAAAATCAGAGCCTGTACCAAGTACAGCAGGAAGTTGA | 933 | 0.4094 | MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDITNSYAVPFEEDEKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEREEDSKSEPVPSTAGS* | 311 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa2g0830 | 310 | CDD | MPN_RPN7_8 | 15 | 295 | IPR033858 | GO:0005838 | |
Psa2g0830 | 310 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 1 | 310 | - | - | |
Psa2g0830 | 310 | Gene3D | Cytidine Deaminase, domain 2 | 10 | 194 | - | - | |
Psa2g0830 | 310 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 13 | 124 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Psa2g0830 | 310 | ProSiteProfiles | MPN domain profile. | 17 | 154 | IPR037518 | - | |
Psa2g0830 | 310 | MobiDBLite | consensus disorder prediction | 291 | 310 | - | - | |
Psa2g0830 | 310 | SMART | pad1_6 | 16 | 150 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Psa2g0830 | 310 | Pfam | Maintenance of mitochondrial structure and function | 174 | 285 | IPR024969 | - | |
Psa2g0830 | 310 | PANTHER | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 | 1 | 310 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa2g0830 | Psa-Chr2 | 50997264 | 51001317 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa2g0830 | 19 | 248 | Eukaryotic Initiation Factors Gene Family | AT2G39990 | 29.487 | 5.20e-26 | 102 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa2g0830 | K03038 | - | gmx:100790393 | 584.334 |