Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0823 ATGGATGTTGAAACCCTTTATTCTCCTTATTTTATGATGGATCCAAATTGGTTTGTTGAAGAGAGTCATAACACAGAATGGAGTAGAGAAGATAACAAGAAGTTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCTGATAGATGGTTGAAGATTGCTGAGATGATTCCTGGTAAGACTGTTTTTGATGTGATTAAACAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATCGAAGCCGGTAATGTTCCGATTCCCGGTTATCTTGCTTCTTCTTTCACCTTTGAAGTTGTTGAAAATCAGAACTATGATGGAAATAGAAGAAGACATGGAACTGTTCGAGGTTCTGATCATGAGAGGAAGAAGGGTGTTCCTTGGACCGAAGAAGAACACAGACGTTTTCTGATGGGACTTCTAAAATACGGCAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTCGTGACAAAGACTCCAACGCAAGTAGCAAGTCATGCACAAAAGTATTACATAAGGCAAAAGGTTTCTTCCGGAGGGAAAGATAAAAGAAGACCAAGCATTCATGATATAACAACTCTAAGCCTCACAGAATCTTCTGCATCAGATAAGAACAAGCAGAAAATGGGTTGGAGTAGTAATAGTCACTACAATGATGGATCACTTCAAGGGCAAGATCTCTATGACTGCTCTTTTCATGAATCTTATGCTAAGATGAAAATTCCCGGTTTCGCGACGGCTTCTAGAGACTTCAACAAAGGAGCTGTTTTTGGTATTCATGCTCTTTAA 789 0.3916 MDVETLYSPYFMMDPNWFVEESHNTEWSREDNKKFESALAIYDKDTPDRWLKIAEMIPGKTVFDVIKQYRELEEDVSEIEAGNVPIPGYLASSFTFEVVENQNYDGNRRRHGTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTLSLTESSASDKNKQKMGWSSNSHYNDGSLQGQDLYDCSFHESYAKMKIPGFATASRDFNKGAVFGIHAL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0823 262 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Psa2g0823 262 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Psa2g0823 262 CDD SANT 126 170 IPR001005 -
Psa2g0823 262 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 208 - -
Psa2g0823 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Psa2g0823 262 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Psa2g0823 262 Gene3D - 125 176 - -
Psa2g0823 262 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 208 IPR043363 -
Psa2g0823 262 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Psa2g0823 262 Gene3D - 19 86 - -
Psa2g0823 262 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Psa2g0823 262 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Psa2g0823 262 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Psa2g0823 262 CDD SANT 26 72 IPR001005 -
Psa2g0823 262 SMART sant 23 75 IPR001005 -
Psa2g0823 262 SMART sant 123 173 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0823 Psa-Chr2 50545126 50547796 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g0823 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0823 - - cam:101492144 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3731 5 294574147 294577094 Psa2g0823 2 50545126 50547796 ECH
Psa2g1375 2 103951472 103955513 Psa2g0823 2 50545126 50547796 ECH
Psa2g0823 2 50545126 50547796 Psa2g0823 2 50545126 50547796 ECH