Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0820 ATGACTAATTCTGATGCTAACAATGGAGATGCATTCTCTGTACCTCGGGCCTGTGCCAAATCCATCTTTCCGCCTCTTGACTTGGCAACTCCATTTCCGTCTCAACAACTCTCAGTCACAGATGTTTGCTGTGTTGTATGGACCTTTTGCCTCGTCTATCGCGGGAATCCCAAGCGATACCTGTTCACCACCGGCTGGAGTGCATTTGTTGACGAGAAGCAACTCGTCAGCGGGGATACCATTGTTTTCATTAAAAACTCAGTTGTAAAGATATTTGTTGGAATCCGTCGGAAAAATATGTTTGTTGCCGCTATTAAAATAACAGAAAAGACATTTATGAATGCAGTAGAATTGGTCGGGAAGAACACACCATTTGAGGTTGTGTTATATCCCACGGTTGATGGTTTTGATTTTGTGGTGGGAGATAAAGTTGATGGTTTCAATGGAAGGGCAAGTCATAAATCTGATAACCATAGTATTTTGAACTCCTTTGGAGAAAATTTAACTGCTATCCACAACTCTAAGACTGAAAAATCTAGACCTCATTTTATAATATTATTTGGTCAGAGATCATGCGCCTATCTAAAAAAAAGTTTGGATGATTCTCCTATTAACCCAGTTGATGGTCGTGAGAAGTGA 639 0.4038 MTNSDANNGDAFSVPRACAKSIFPPLDLATPFPSQQLSVTDVCCVVWTFCLVYRGNPKRYLFTTGWSAFVDEKQLVSGDTIVFIKNSVVKIFVGIRRKNMFVAAIKITEKTFMNAVELVGKNTPFEVVLYPTVDGFDFVVGDKVDGFNGRASHKSDNHSILNSFGENLTAIHNSKTEKSRPHFIILFGQRSCAYLKKSLDDSPINPVDGREK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0820 212 Gene3D - 1 99 IPR015300 -
Psa2g0820 212 PANTHER AUXIN RESPONSE FACTOR 1 105 - -
Psa2g0820 212 CDD B3_DNA 1 83 IPR003340 GO:0003677
Psa2g0820 212 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 105 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa2g0820 212 Pfam B3 DNA binding domain 1 99 IPR003340 GO:0003677
Psa2g0820 212 SMART B3_2 1 99 IPR003340 GO:0003677
Psa2g0820 212 SUPERFAMILY DNA-binding pseudobarrel domain 1 99 IPR015300 -
Psa2g0820 212 ProSiteProfiles B3 DNA-binding domain profile. 1 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0820 Psa-Chr2 50370470 50371108 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0820 1 140 B3 DNA Binding Superfamily AT1G77850 36.158 6.71e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa2g0820 B3 1.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0820 - - mtr:MTR_5g040880 155.992