Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0816 ATGGCTCAACAACAACAGTTACGCAATGTAGATCGTAAAATATGGAAAGAATTTGCAGGAAGTTCTTTCACAGTTCCGAAACTCCATTCTAAAGTTTATTATTTTCCTTTTGGTCATTTGGAACACTCTCCTATAACCCTTAGCACTCAAACACTCTCCCTCCTCCGCCCATTCATTCTTTGCACTGTCTCCTCTGTTGATTTCCTGGCAGATCCTGAAACTGATCAAATCTTTGCAAAACTACTCCTCACTCCAGTTCTTGACTCAACTATTGTTGTTCCTGTCGAGGCTTCTACTGAAGAAGACAATGGTGACGATCATGTTGTTTCCTGTGCCAAGACTCTGACTAATTCTGATGCTAACAATGGAGGTGCATTCTCTGTACCTCGGGCCTGTGCCAAATCCATCTTTCCGCCTCTTGACTTCGCAACTCCATTTCCTTCTCAACAACTCTCCGTCACAGATGTTTGCGGTGTTGTATGGACCTTTTGCCTCGTCTATCGCGGGAATCCCAAGCGATACCTGTTCACCACCGGCTGGAGTGCATTTGTTGACAAGAAGCAACTCGTCGGCGGGGATACCATTGTTTTCATTAAAAACTCAGCTAGAAAGATATTTGTTGGAATTCGTCGAAAAAATATGTTTGCCGCTGCTATTAAAATAACAGAAAAAACAGTTATGAATGCAGTAGAATTGGCTGGGAAGAACACACCATTTGAAGTAGTGTGTTATGCAACGGTTGATGGTTTTGATTTTGTGGTGGGAGATAAAGTTGTGGAGGATGCAATGAAGTTTGATTGGAATCCTGGAATGAGAGTCACACACACAGTTAAGGGATGCTCAATTTTTCATGGGACAATATCTGCCATCTTTCCGTCTAAATCTCATCCATGGCGCATGCTAGAGGTTGAATGGGATGAACCCGAAGTCTCGGAGAATTTAAAGCATATAAGTCCGTGGCATGTTGAACCTGATTTTAGCATACCTGAACTACATCAATTACTCCCCTCAACAAAACGAATAAGAGTTGCTCAAAGGGTTGACTTATTAAGTGATACCGAAAACATTTCTTCTATTTCAATGGAACCCTTGAACCAAACACTGTTGAATTTTGATGGCATCCCGGGAGTCAGGCAAAATCATTTTCCTGGATCCATTTCCTCCAACTCTTTGAAAGATACTTCATTTGAGAAAATTTCAATGGAAGGGTTAGACAATATGTCAATCGAGCTAAACACTACAAGTCATAAATCTGATAATCATAGTATTTTGAACTACTCTGGAGCAAACTTAACTGATATCCACAACACCAACACTGAAAAACCTATGTCTGATTTTATAATATTATTTGGTCAGATTGTGCGCCCGGCTAAAAAAAGTTTGGATGATTCTGCTATTAACTTAATTGATGGTCGTGAGAAGCGAAATGAAGTTGAAGATAATGTCAAATCTGTTGAGAAAAAATAG 1467 0.4022 MAQQQQLRNVDRKIWKEFAGSSFTVPKLHSKVYYFPFGHLEHSPITLSTQTLSLLRPFILCTVSSVDFLADPETDQIFAKLLLTPVLDSTIVVPVEASTEEDNGDDHVVSCAKTLTNSDANNGGAFSVPRACAKSIFPPLDFATPFPSQQLSVTDVCGVVWTFCLVYRGNPKRYLFTTGWSAFVDKKQLVGGDTIVFIKNSARKIFVGIRRKNMFAAAIKITEKTVMNAVELAGKNTPFEVVCYATVDGFDFVVGDKVVEDAMKFDWNPGMRVTHTVKGCSIFHGTISAIFPSKSHPWRMLEVEWDEPEVSENLKHISPWHVEPDFSIPELHQLLPSTKRIRVAQRVDLLSDTENISSISMEPLNQTLLNFDGIPGVRQNHFPGSISSNSLKDTSFEKISMEGLDNMSIELNTTSHKSDNHSILNYSGANLTDIHNTNTEKPMSDFIILFGQIVRPAKKSLDDSAINLIDGREKRNEVEDNVKSVEKK* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0816 488 Gene3D - 109 213 IPR015300 -
Psa2g0816 488 PANTHER AUXIN RESPONSE FACTOR 220 476 - -
Psa2g0816 488 PANTHER AUXIN RESPONSE FACTOR 7 218 - -
Psa2g0816 488 Coils Coil 468 488 - -
Psa2g0816 488 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Psa2g0816 488 CDD B3_DNA 113 211 IPR003340 GO:0003677
Psa2g0816 488 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Psa2g0816 488 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 218 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa2g0816 488 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 220 476 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa2g0816 488 SUPERFAMILY DNA-binding pseudobarrel domain 108 214 IPR015300 -
Psa2g0816 488 Gene3D - 265 329 - -
Psa2g0816 488 SMART B3_2 111 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0816 Psa-Chr2 50196030 50197660 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0816 8 481 B3 DNA Binding Superfamily AT1G77850 33.394 1.19e-84 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa2g0816 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0816 - - mtr:MTR_5g040880 369.007