Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0777 ATGACAGACGGTCATGTCTTCAACAACATCACCCTCGGCGGCCGCGGCGGCACGAATCCAGGGCAGATAAAAATATATTCCGGGGGAATTATATGGATGAGACAGGGTAAATCTATTGAAGTTGACAAAGCCGACTTATTGAGCGTTACATGGACGAAGGTTCCAAAGAGTAATCAACTTGGTGTTCAGAACAAAGATGGTTCGTTCCACAAATTCACTGGATTTCGTGATCAGGACGTTGTAAGTTTGACAAGTTTTTTCCAAAAGACATTTGGAGTAACTGTAAAGGAGAAGCAACTTTCTATTAGTGGACGCAATTGGGGAGAAATTGATTTAAATGGTAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGCCTTTAGCAGATGTCTCTCAAACAAGCTTTCAAGGGAAAAATGATGTGATCTTGGAGTTTCATGTGGATGACACCACTGGAGCCAATGAGAAAGATTCATTGATGGAGATAAGTTTCCATATACCGAATTCAAACACCCAGTTCGTTGGTGATGAAAATTGCCCCCCTGCTCAGGTTTTCCATGATAAAATAGCTCCCGTGGTTGATACTGGAGTTGGTGAAAATCCTGTTGTTACATTTGAGAGTATTGCAATCCTCACACCAAGAGGACGATATAGTGTCGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGACTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTCGTCGTTATTAGTCTTGACCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTTATGCAGTTTGAAACTGATGATGTCGTTCAAAGTGAATTGGCATTAAGTGAAGATCTCTATAACGCTAAGTACAAAGACAAGTTGGAGCTGTCTTATAAGGGGCTCATCCATGAAGTGTTCACCACAATATTACGTGGCTTGTCTGGGGCCAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCTGTAAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTACTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAGCAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGGTTTTATCAGTTCAAAGGGCTTGAAAATTATGAATTTAGGAGATGCCCAACAAGCCGCTGGTGTGGCTAAGGTTCTTGAGAGCGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCTGGTGAAAATGAAAGTGACGAGGAGGATGAAGATTTTGTTGCTGAAAAAGATGATGAAGGGTCTCCTACGGATGATTCTGGGGCAGATGATTCTGATGCTAGCCAAAGTGATGATGAGAAAGAGAAGCCTCTCAAAAAGGAGCCTAAGAAGGATCTACCTTCTAGCTCTAAAGCATCTACTTCTAAGAGGAAACCAAGAGATGCCGATGAAGATGGAAAGAAGAGAAAACCAAAGAAGAAAAAAGATCCAAATGCACCCAAGAGGTCATTGTCTGGGTTCATGTTCTTTTCACAAGTGGAAAGAGAGAATCTGAAGAAAACTAATCCTGGGATCTCATTTACGGACGTGGCAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGGGGAGGAGAAGGAGCCATACGAGGCAAAAGCCCGCATTGATAAAAAACGTTATCAGGATGAAATTAGTGGCTACAAGAATGCACAAGCACAACCGGTGAACATTGATTCAGGAAATGAGTCTGATAGTACCTGA 1929 0.4147 MTDGHVFNNITLGGRGGTNPGQIKIYSGGIIWMRQGKSIEVDKADLLSVTWTKVPKSNQLGVQNKDGSFHKFTGFRDQDVVSLTSFFQKTFGVTVKEKQLSISGRNWGEIDLNGNMLAFMVGSKQAFEVPLADVSQTSFQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENCPPAQVFHDKIAPVVDTGVGENPVVTFESIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDDVVQSELALSEDLYNAKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLITHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQQAAGVAKVLESDDDDAVDPHLERIRNEAGENESDEEDEDFVAEKDDEGSPTDDSGADDSDASQSDDEKEKPLKKEPKKDLPSSSKASTSKRKPRDADEDGKKRKPKKKKDPNAPKRSLSGFMFFSQVERENLKKTNPGISFTDVARVLGEKWKKMSGEEKEPYEAKARIDKKRYQDEISGYKNAQAQPVNIDSGNESDST* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0777 642 SMART Rtt106_2 345 438 IPR013719 -
Psa2g0777 642 MobiDBLite consensus disorder prediction 622 642 - -
Psa2g0777 642 CDD PH2_SSRP1-like 339 438 - -
Psa2g0777 642 CDD PH1_SSRP1-like 201 337 - -
Psa2g0777 642 Pfam POB3-like N-terminal PH domain 6 96 IPR035417 -
Psa2g0777 642 MobiDBLite consensus disorder prediction 503 547 - -
Psa2g0777 642 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 640 - -
Psa2g0777 642 MobiDBLite consensus disorder prediction 466 564 - -
Psa2g0777 642 Gene3D High mobility group box domain 539 637 IPR036910 -
Psa2g0777 642 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 640 - -
Psa2g0777 642 Gene3D - 1 91 IPR011993 -
Psa2g0777 642 Pfam Histone chaperone Rttp106-like 347 436 IPR013719 -
Psa2g0777 642 MobiDBLite consensus disorder prediction 620 642 - -
Psa2g0777 642 PRINTS Structure-specific recognition protein signature 216 232 IPR000969 GO:0003677|GO:0005634
Psa2g0777 642 PRINTS Structure-specific recognition protein signature 238 254 IPR000969 GO:0003677|GO:0005634
Psa2g0777 642 PRINTS Structure-specific recognition protein signature 261 277 IPR000969 GO:0003677|GO:0005634
Psa2g0777 642 PRINTS Structure-specific recognition protein signature 326 339 IPR000969 GO:0003677|GO:0005634
Psa2g0777 642 PRINTS Structure-specific recognition protein signature 353 371 IPR000969 GO:0003677|GO:0005634
Psa2g0777 642 PRINTS Structure-specific recognition protein signature 371 388 IPR000969 GO:0003677|GO:0005634
Psa2g0777 642 PRINTS Structure-specific recognition protein signature 397 413 IPR000969 GO:0003677|GO:0005634
Psa2g0777 642 PRINTS Structure-specific recognition protein signature 413 431 IPR000969 GO:0003677|GO:0005634
Psa2g0777 642 CDD HMGB-UBF_HMG-box 558 621 - -
Psa2g0777 642 SMART hmgende2 555 625 IPR009071 -
Psa2g0777 642 SUPERFAMILY PH domain-like 202 437 - -
Psa2g0777 642 Gene3D - 93 177 IPR038167 -
Psa2g0777 642 Gene3D - 336 445 IPR011993 -
Psa2g0777 642 MobiDBLite consensus disorder prediction 473 502 - -
Psa2g0777 642 Pfam Structure-specific recognition protein (SSRP1) 104 172 IPR024954 -
Psa2g0777 642 Gene3D - 199 335 - -
Psa2g0777 642 Pfam HMG (high mobility group) box 556 624 IPR009071 -
Psa2g0777 642 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 556 624 IPR009071 -
Psa2g0777 642 SUPERFAMILY HMG-box 543 625 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0777 Psa-Chr2 47386830 47392985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0777 552 624 ARID Transcription Factor Family AT1G04880 39.726 3.33e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Psa2g0777 Rtt106 2e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0777 K09272 - gmx:100805034 1060.83