Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0741 ATGTGCAGTGGTTCAAAGAGTAAAGTTTCTTCATCAGATTACACCATGGAGAGTAAGCTTGAGAAGGGTATTCAGAACTCATCAGTATTGCTTGAATTGTCTGCTTGTGATGATTTTGATGCTTTTGTGAGAGAAGTGGAAGAGAAGGGTTTGGATTTGAATGAAGAAGGGTTTTGGTATGGCAGGAGAATTGGGTTGAAGGAGATGGGAGCTGAGAAGAGGACTCCACTCATGATTGCTTCTTTGTTTGGAAGCATCAAGGTGGTTAAGTATATTGTTATGACTGGAAAGGTTGATGTTAATGGAGTTTGTGGTTCTGATATGGTTACTGCTCTTCATTGTGCGGTTGCTGGTGGTTCGGAATTATCGTTTGAGGTTGTCAAGCTTTTGCTCGAGGCTGGGGCGGATGCTGATTGTGTTGATGCTGGTGGAAATAAGCCGGTTGATTTGATTGTGCCTGGTTTTAATGCTTTGTCGAAATCGCGTAGGAAGGTTTTGGAGCTGTTTCTGAGAGGTGAGGTGAGTGCCGAACTCGTCCAAGGGGAGATGGATGTTCCTTTGAAAAAAGATGGTGGTGATAAGAAAGAGTATCCTATTGATATATCGTTGCCGGATATAAACAACGGTGTATATGGATCGGATGAGTTTAGGATGTATAGTTTCAAGGTGAAGCCGTGTTCGCGGGCTTATTCTCACGATTGGACTGAGTGTCCGTTTGTTCATCCAGGTGAGAATGCAAGGAGGAGAGACCCAAGAAAATACCCTTACAGCTGTGTTCCTTGCCCGGAGTTTCGCAAAGGTTCTTGCCAGAAAGGAGATTCTTGCGAGTATGCGCACGGTGTTTTCGAGTCATGGCTACATCCTGCACAATACCGAACAAGGCTTTGCAAGGACGAGACTGGCTGTAACAGAAAAGTCTGCTTCTTTGCTCACAAACCTGAAGAGCTCCGTCCTGTGTATGCTTCCACTGGGTCCGCTATGCCTTCGCCGAAATCTTATTCAGCTAGTGCACTTGACATGACATCGATGAGTCCGTTGTCTCTTAGTTCTTCATCTATGCCTATGTCAACCGTGTCAACGCCGCCCATGTCTCCCTTGGCAGGTTCATCGTCTCCCAATGGTGGAAACTTGTGGCAGAACAAAATAAACCTGACTCCACCATCGTTGCAACTCCCTGGTAGCCGGTTGAAGAGTGCTTTGAGCGCCAGGGATCTAGATTTCGAGATGGAACTGCTTGGTCTCGATAGTCCTCGCCGTCAACAACAGCACCAGCAGCAACAGCAGCAACAACAACAACAGCAAATGATTGAAGAGATTGCCAGAATCTCTTCTCCATCTTTCCGGAGCAACGAATTCAACAGGATTGTTGATATGAATCCAACTAACCTCGATGACCTATTAGCATCTGCTGATCCTAATTTACTATCTCAACTACATGGTCTTTCCATGCAACCTTCAACACCCACACAACAGATGCAATCTCCCACTGCGATGCAGATGCGTCAAAACATGAACATGAACCACCTTCGCGCAAGTTATCCATCCAACAACACACCTTCCTCTCCAGTAAGAAAACCCTCAGCATACGGGTTTGATTCATCAGCTGCCGTGGCAGCTGCAGTGATGAATTCCAGGTCAGCCGCCTTCGCAAAGCAACGCAGCCAGAGTTTCATTGACCGCGGCGCAGCAACTCACCATCTCGGGCTTTCTCCACCGTCCAACCCTTCCTGCAGAGTCTCCTCCGGCCTTTCGGATTGGGGTTCCCCCACCGGGAAACTCAACTGGAGCGTAAACGGAGACGAGCTGAACAAGCTAAGGAAATCAGCTTCTTTCGGGTTCAGAAACAACACGGCACCATCAACCGCATCATCCCAACACGGTGAGCCTGATGTCTCTTGGGTTAACTCATTGGTGAAGGATGTTCCCTCTGAGAATTCGAATTCGAATTCTAACATGTATGCAACCGAGAAGACGAGACAGCAACAACAGCATCAGCAGCAACAGCAGTATGATCTGAATAGAGAAATGCTTCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAACAGATGGTTGCATGA 2082 0.4726 MCSGSKSKVSSSDYTMESKLEKGIQNSSVLLELSACDDFDAFVREVEEKGLDLNEEGFWYGRRIGLKEMGAEKRTPLMIASLFGSIKVVKYIVMTGKVDVNGVCGSDMVTALHCAVAGGSELSFEVVKLLLEAGADADCVDAGGNKPVDLIVPGFNALSKSRRKVLELFLRGEVSAELVQGEMDVPLKKDGGDKKEYPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASALDMTSMSPLSLSSSSMPMSTVSTPPMSPLAGSSSPNGGNLWQNKINLTPPSLQLPGSRLKSALSARDLDFEMELLGLDSPRRQQQHQQQQQQQQQQQMIEEIARISSPSFRSNEFNRIVDMNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMQSPTAMQMRQNMNMNHLRASYPSNNTPSSPVRKPSAYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGAATHHLGLSPPSNPSCRVSSGLSDWGSPTGKLNWSVNGDELNKLRKSASFGFRNNTAPSTASSQHGEPDVSWVNSLVKDVPSENSNSNSNMYATEKTRQQQQHQQQQQYDLNREMLPPWVEQLYIEQEQMVA* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0741 693 PANTHER UNKEMPT FAMILY MEMBER 18 692 IPR045234 -
Psa2g0741 693 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Psa2g0741 693 MobiDBLite consensus disorder prediction 348 371 - -
Psa2g0741 693 SUPERFAMILY Ankyrin repeat 40 164 IPR036770 -
Psa2g0741 693 SMART ANK_2a 107 139 IPR002110 GO:0005515
Psa2g0741 693 SMART ANK_2a 72 102 IPR002110 GO:0005515
Psa2g0741 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 280 IPR000571 GO:0046872
Psa2g0741 693 MobiDBLite consensus disorder prediction 569 585 - -
Psa2g0741 693 MobiDBLite consensus disorder prediction 566 585 - -
Psa2g0741 693 Gene3D - 16 193 IPR036770 -
Psa2g0741 693 MobiDBLite consensus disorder prediction 417 436 - -
Psa2g0741 693 Pfam Ankyrin repeats (3 copies) 70 139 IPR002110 GO:0005515
Psa2g0741 693 ProSiteProfiles Zinc finger C3H1-type profile. 255 282 IPR000571 GO:0046872
Psa2g0741 693 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Psa2g0741 693 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 18 692 - -
Psa2g0741 693 Gene3D - 256 318 - -
Psa2g0741 693 SMART c3hfinal6 290 313 IPR000571 GO:0046872
Psa2g0741 693 SMART c3hfinal6 255 281 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0741 Psa-Chr2 44569844 44578813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0741 28 688 C2H2 Transcription Factor Family AT5G12850 40.276 6.81e-144 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa2g0741 Ank_2 2.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0741 - - gmx:100783376 964.911