Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0730 ATGATTAGCTCGAATTCGAACGGCGATGATGAGAACGGCGATAAAGTGAGAGGTTCATGGAGTCCGCAAGAAGATGATACATTGAGGAGATTGGTGAAAGAATACGGTCCACGAAACTGGTCTGTGATAAGCAACGGAATCCCCGGTCGTTCTGGAAAATCTTGCCGTCTGCGGTGGTGTAATCAGCTGAGTCCCGACGTTCAACACCGTGCTTTCACTCCTGAGGAAGATAACATCATAATCCAAGCCCACGCGGTTCACGGCAATAAATGGGCGACGATATCTCGTCTTCTCCCTGGTCGAACCGACAACGCGATAAAAAACCACTGGAACTCCACCCTCCGCCGTCGTCTCACGGAGGCGCCGCTGACTCCTTCCCCCGTGAGTATCGGGAAGCGTCCTCCAAAAGCGTATGACGGTTATAACGATTTGTTAGATCTCCGTTATCCTTACAAACGGCCTTGTCTCGAGAATAACGGTTCACGTGACGGTGAAGAAACGGTTACGGAAGAAGAAGACGCGGGGAATGATGTTGCCGTTATGACGCCGTTAAGTTTGTTTCCACCTGGTGAGAAATTGTTGAGAGAAGAAAAAGAGAAAAAAGAAGAGATCAAGTTGTTGGGTAATGATAGTTTGAGGTCGGTTATTCAGCGCATGATAGCAGAGGAAGTTAGGAATTATATTGATAACATGTGCCATGATGGGTTTCTACAAGCTCCTGATTCAACACATCGAAAGTGA 741 0.4764 MISSNSNGDDENGDKVRGSWSPQEDDTLRRLVKEYGPRNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRAFTPEEDNIIIQAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRLTEAPLTPSPVSIGKRPPKAYDGYNDLLDLRYPYKRPCLENNGSRDGEETVTEEEDAGNDVAVMTPLSLFPPGEKLLREEKEKKEEIKLLGNDSLRSVIQRMIAEEVRNYIDNMCHDGFLQAPDSTHRK* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0730 246 Gene3D - 16 68 - -
Psa2g0730 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 63 IPR017930 -
Psa2g0730 246 CDD SANT 19 61 IPR001005 -
Psa2g0730 246 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Psa2g0730 246 Pfam Myb-like DNA-binding domain 17 63 IPR001005 -
Psa2g0730 246 Pfam Myb-like DNA-binding domain 71 113 IPR001005 -
Psa2g0730 246 MobiDBLite consensus disorder prediction 1 23 - -
Psa2g0730 246 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Psa2g0730 246 CDD SANT 71 114 IPR001005 -
Psa2g0730 246 PANTHER MYB PROTEIN-RELATED 7 157 - -
Psa2g0730 246 PANTHER OS01G0850400 PROTEIN 7 157 - -
Psa2g0730 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Psa2g0730 246 Gene3D - 71 118 - -
Psa2g0730 246 ProSiteProfiles Myb-like domain profile. 12 63 IPR001005 -
Psa2g0730 246 SMART sant 16 65 IPR001005 -
Psa2g0730 246 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0730 Psa-Chr2 43819712 43821174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0730 6 119 MYB Transcription Factor Family AT4G37260 71.053 1.36e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g0730 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0730 - - cam:101514420 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0730 2 43819712 43821174 Psa2g0730 2 43819712 43821174 ECH