Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0728 ATGGACCAACCTCTTCATCATCTTCAAGAAACCAAACCCACCGCCATCACCGTTGTTACCACCACTCCAAGCGAAACACCTAACACCAGCACTGATAACAGCAATAACAGTAGCAACAACAACAACACTATTAAGAATCGTAAATGCAAAGGTAAAGGTGGACCTGATAACAACAAATTCAGATACCGTGGTGTTAGACAACGTAGTTGGGGTAAATGGGTTGCTGAAATTCGTGAGCCTCGGAAACGTACTCGTAAATGGCTTGGTACTTTTTCAACTGCTGAAGATGCTGCTAAAGCTTATGATCGCGCTGCTATTATTCTCTACGGTTCTAGGGCTCAGCTGAATCTTCAAACCTCCGTTTCTTCTTCCAATTCTTCTTCTCAAAACTCTTTGTCTTCTTCCAATCGTAACTCTTCTTCTACTTCCACAAATACTCTCCGTCCTTTACTTCCTCGTCCTTCTGAAGATGTTTTGAATCAGCAACAGATGCAGAAGATTAATAATAATGTTGAGAATTGTGATGTGGTTGAGGGAATTATGAGCGGTTCAAATTTGGTGGGGTTAACAAGTTTTGATTCTTGTCAAAATATTAGTACTAAAATGGATGGAACAGTGGTGGATCCAGATCCAGAAGGGGTTTGTGTTGGTTCTCCAAATTCTATGTGGCCTTTGACAAGTGATTTATGGGACTATAGTGATCCTCTCTTCTTTGATTTTTGA 723 0.4066 MDQPLHHLQETKPTAITVVTTTPSETPNTSTDNSNNSSNNNNTIKNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAAKAYDRAAIILYGSRAQLNLQTSVSSSNSSSQNSLSSSNRNSSSTSTNTLRPLLPRPSEDVLNQQQMQKINNNVENCDVVEGIMSGSNLVGLTSFDSCQNISTKMDGTVVDPDPEGVCVGSPNSMWPLTSDLWDYSDPLFFDF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0728 240 MobiDBLite consensus disorder prediction 13 47 - -
Psa2g0728 240 Pfam AP2 domain 61 109 IPR001471 GO:0003700|GO:0006355
Psa2g0728 240 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 156 - -
Psa2g0728 240 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Psa2g0728 240 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Psa2g0728 240 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Psa2g0728 240 MobiDBLite consensus disorder prediction 49 63 - -
Psa2g0728 240 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Psa2g0728 240 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Psa2g0728 240 MobiDBLite consensus disorder prediction 1 63 - -
Psa2g0728 240 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Psa2g0728 240 MobiDBLite consensus disorder prediction 120 152 - -
Psa2g0728 240 CDD AP2 61 118 IPR001471 GO:0003700|GO:0006355
Psa2g0728 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 14 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0728 Psa-Chr2 43747338 43748327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0728 47 155 AP2-EREBP Transcription Factor Family AT2G40220 77.273 1.24e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g0728 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0728 K09286 - qsu:112015561 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0728 2 43747338 43748327 Psa2g0728 2 43747338 43748327 ECH