Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0713 ATGAACAGAAAAAGGCAGCTAAATCAATTGAAGAATCCATTCAATTCTCATCCGTTTGAAGCAGTTTCATCTGGCTCATGGCATCCTGTGGAGTCCATAAAAGTTAAGTCAGGAACTATGACCATACATTTCACAGATAATCACCATATGGCCATGGATAAAGGTACTTTATCAGACATTCGAATAAGCTCAAGGAAAGCTATTGTGTCTGATTGCTCCCGATTTTTACGTCCTGGAATCGACATATGCGTTCTAACACCCCCTAAACAAGCCAAGGATTCTGCTGGTTTAAATCCAGAGCCTGTTTGGAAGGATGCTAGAATAAGCTCTATACAAAGAAAGCGGCATGATTTCGAGTGCTCGTGTCAGTTTTTTGTTAACTTCTATGTTGATCAAGGTGCACTTGGTTTAGAGATGAGAACTCTTTGTAAGGATATCAAAGTATTCGGACTCAATCAGATCTCCATCCTCCAAAAAGTCGAACATAATCCTTGTGATAATCAGCCCTACCGGTGGTCTTCATCCGAGGACTGCTCTTCATTGCCACACAGTAAATTGCTATTGGGAAAGTTTTTATCCGATCTTTCATGGTTAGTTGTTACGTCGGTTATCAAGAAGGTTTCCTTCAGTGTAAGATCGGTTGAAAACAAGATGGTGTATCAAATTTTGGGAGGTGATAGTAATGCTAGCTCGTTGTCTAACAGCGAGTCTCATATTGATGTTGTCAGTTTCAGAAATGACAATGGCATGTTGGTACCGATCGTTTCTCAAGTTGCTATAGCTAACACCAAGATAGTTTGTCATGCATATGAATCCCCTGTGGATGAAGCGTCATCGTCTTTGAGTGCTGACGGCTTACGACGCTCCAAACGCAGGCATGTCCAGCCCGAGCGTTACCTTGGTTGCGAAGTTAAAGAGTTGGATGTTGGTTCTTTTAGAAACAGTCCGCCGGTTAGGATAAATACATCCAACAAAGAAGACGGAATGTCGTTGTCTTTAGCGTGCTTTTTGCGTTTGCAACAAAGCCGTCGCGAAAAGGATGGTGAGAAATCTCAGAACTCCGACAGACCGAATACCGACCGAAAGCTTCTAGTGTACAACCGGAGGCCTAAAAACCGAGAAGTGAAGAAGTCTTGTGAGATTGATCAAAATGAACATCATAATCCACTTGCTATTATTCCTCTCCCTGATCATGATGCTGATCCAATAGCAGTGGAGCATTGCGATCTAAACAGAAACGTTATTAGAAGTAATGAACATGAATCATCCGAAATTTCTCTCAAGTATCATCATTTGGTTAATAGTCCTAAACCATGGAAGAACATTAACTTGTTAGATTCTTCTGGCAAGTCAGAAGAAGCTGAAAGTAGCGATACTGCTTTTTTGAGAAGTAAATTTTTCGCCTCCTCTAAGTTGCAAAAGAAGAGTTTGGGTGGTTTGGATGATATGGATCTTGGAAATAGATGGGAAGGGATAAAAAGAAAATCCAAAAAAGGTTTTCGTGAGGGAAAATATCGTTCGACGTATTTAAGAAATAACGGCGAAGGAAGAAGTCATAACTATAAAGACAGATCATTAAATGCAACTGCATACAAGGATTTGATAAATTCATATTTATCGAATATTAATGAAATACCCGTCAAAGAAGAGCCACCTATTACCGATCAATGGAAACAAAGTAACACAACAAATGACGTTGGAAAAAAGGAGGAAACCGAGACTTCTCATGGAGAGGATGGGGATGAAAAAGCTGCACTCGATATATTGTGGAAAGAACTTGAAGTGTCGCTTGCATCGAGTTATTTTGAAGAATCAGAGGTTTCGAATGCGATTGTTCCTTACGAGGCTGAGAAAATTTTGAAAAAAGATTGTGAACATGATAATAGATTGGATGAAGAAATTGGAATATACTGCATTAGATGTGGATTTGTCACCACCGATATCAGAGATGTTAATCCAATCTTTGTTGAAAACTCGGTGTGGCGTCAAGAGGAGAAACAGCGTGATGCAGCAGAAGACAAAGATCCTTCGAAGGCTGATGAAGACGATGATTTCCATTTCTTTCCGACCAATGTTTCTCCCGACGAACCAATATCTGAAGCAAACGAAAGCGTTTGGTCGCTAATTCCAGAACTCAAAGACAAGCTGCACGTGCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATCGCAGGCTCTACAGATCCAAGACTAATTGAAGCAGAATACAGAAAAAGAGGTGGATGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATTGCTTTTCTCGTAAGCTACTTGAAGTTATTCCCGGGGAAGCGACCTCTAGTTCTTGCACCGAAAACAACTCTCTACACGTGGTATAAAGAGTTTATCAAGTGGGAGATTCCTATACCGGTGTATTTGATTCACGGTCGCAGAACCTATAGAGTATTCAAGCAGAATAATTTTGCTTCTCTTCCCGGGGTTCCCAAGCCTACCGATGACGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCGCATCCGAGCGTTCTTATCATGGGCTACACTTCGTTTTTAACATTGATGCGAGAGGATTCGAAGTTTGCTCACAGAAAGTTTATGGCTAAAGTGTTGAGGGAAAGTCCGGGACTATTGGTACTTGATGAAGGCCACAATCCTAGAAGCACTAAGTCGAGGTTGAGAAAAGTTTTGATGAAAGTACAAACCGAGTTGAGAATATTACTTTCCGGGACTTTGTTTCAAAATAACTTCTGCGAATACTTCAACACTCTTTGCTTGGCAAGACCGAAATTCGCTCACGAAGTACTGAAAGCATTAGACCCTAAATACAGGAAGAAAAAGAAAGGAGCGGAACGGAAAGGAGCAGAGAAAGCACAATATTTAATCGAGTCACGGGCTAGAAAGTTCTTCTTAGATAATATCGCTAAGAAAATTGACTCGAACGTTGGTGAGGAAAGGCTTCAAGGCTTAAACATGTTGAGAAATGTGACGAATAGTTTTATCGATGTTTATGAAGGTGGAAGTTCCGACGATTTACCTGGTATACAGATTTACACATTGTTAATGAACACAACCGATATACAGCATGAGATTCTGCGGAAACTGCACATTGACATGGCTAAGTGCAGTGGATATCCTCTCGAGTTAGAGCTTTTGATAACACTTGGATCGATTCATCCTTGGTTGGTCAAAACAGCGGTATGTTCTCAGAAGTTTTTAACAAAGGAACAATTGTCTGATCTTGATAAGTACAAGTTTGATTTGAAAATAGGTTCAAAAGTTCGATTCGTTTTGAGCCTTATCTATCGCGTTGTCAAGAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCACCTGTGAGACTATTTCAAGAGTATTTCGAGAAGTACTTTGGATGGCAAAAAGGCCGTGAAGTTTTAGTACTAACCGGGGAGCTCGAGCTCTTCGAACGTGGCAAAATAATGGATAAATTCGAGGAGCCGGGTGGAGCATCAAAGATACTACTTGCTTCAATCACAGCCTGTGCTGAAGGCATTAGTTTGACAGCGGCTTCGCGTGTGATCATGTTGGATTCGGAGTGGAATCCTTCGAAAACAAAGCAAGCTATTGCACGCGCGTTTCGTCCGGGTCAGCAGAAAATGGTTTATGTTTATCAGCTATTGGTGACGGGTTCGTTGGAGGAAGATAAGTATCGACGAACCACGTGGAAAGAATGGGTGTCGAACATGATTTTCAGCGAGGCGTTTGTCGAGGATCCTTCTCGTTGGCAAGCTGAGAAGATTGAAGATGATATTCTGCGCGAAATGGTCGAGGAAGATAAGTCAAAATCATTTCATATGATCATGAAGAATGAAAAAGCTTCAACAAACAAATAA 3909 0.4088 MNRKRQLNQLKNPFNSHPFEAVSSGSWHPVESIKVKSGTMTIHFTDNHHMAMDKGTLSDIRISSRKAIVSDCSRFLRPGIDICVLTPPKQAKDSAGLNPEPVWKDARISSIQRKRHDFECSCQFFVNFYVDQGALGLEMRTLCKDIKVFGLNQISILQKVEHNPCDNQPYRWSSSEDCSSLPHSKLLLGKFLSDLSWLVVTSVIKKVSFSVRSVENKMVYQILGGDSNASSLSNSESHIDVVSFRNDNGMLVPIVSQVAIANTKIVCHAYESPVDEASSSLSADGLRRSKRRHVQPERYLGCEVKELDVGSFRNSPPVRINTSNKEDGMSLSLACFLRLQQSRREKDGEKSQNSDRPNTDRKLLVYNRRPKNREVKKSCEIDQNEHHNPLAIIPLPDHDADPIAVEHCDLNRNVIRSNEHESSEISLKYHHLVNSPKPWKNINLLDSSGKSEEAESSDTAFLRSKFFASSKLQKKSLGGLDDMDLGNRWEGIKRKSKKGFREGKYRSTYLRNNGEGRSHNYKDRSLNATAYKDLINSYLSNINEIPVKEEPPITDQWKQSNTTNDVGKKEETETSHGEDGDEKAALDILWKELEVSLASSYFEESEVSNAIVPYEAEKILKKDCEHDNRLDEEIGIYCIRCGFVTTDIRDVNPIFVENSVWRQEEKQRDAAEDKDPSKADEDDDFHFFPTNVSPDEPISEANESVWSLIPELKDKLHVHQKKAFEFLWQNIAGSTDPRLIEAEYRKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNNFASLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKFMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAHEVLKALDPKYRKKKKGAERKGAEKAQYLIESRARKFFLDNIAKKIDSNVGEERLQGLNMLRNVTNSFIDVYEGGSSDDLPGIQIYTLLMNTTDIQHEILRKLHIDMAKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVRLFQEYFEKYFGWQKGREVLVLTGELELFERGKIMDKFEEPGGASKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSNMIFSEAFVEDPSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASTNK* 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0713 1302 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1300 IPR044567 GO:0080188
Psa2g0713 1302 Gene3D - 692 985 IPR038718 -
Psa2g0713 1302 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1300 - -
Psa2g0713 1302 MobiDBLite consensus disorder prediction 663 684 - -
Psa2g0713 1302 CDD DEXHc_ATRX-like 716 942 - -
Psa2g0713 1302 Pfam SNF2-related domain 718 955 IPR000330 GO:0005524|GO:0140658
Psa2g0713 1302 Gene3D - 1032 1302 IPR027417 -
Psa2g0713 1302 Pfam Helicase conserved C-terminal domain 1104 1220 IPR001650 -
Psa2g0713 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 944 IPR027417 -
Psa2g0713 1302 CDD SF2_C_SNF 1096 1232 - -
Psa2g0713 1302 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 741 941 IPR014001 -
Psa2g0713 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1284 IPR027417 -
Psa2g0713 1302 Gene3D - 97 147 - -
Psa2g0713 1302 SMART helicmild6 1132 1221 IPR001650 -
Psa2g0713 1302 MobiDBLite consensus disorder prediction 550 581 - -
Psa2g0713 1302 MobiDBLite consensus disorder prediction 343 363 - -
Psa2g0713 1302 SMART ultradead3 712 956 IPR014001 -
Psa2g0713 1302 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1107 1268 IPR001650 -
Psa2g0713 1302 MobiDBLite consensus disorder prediction 564 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0713 Psa-Chr2 41816115 41823114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0713 1100 1239 RAD5 or RAD16-like Gene Family AT5G43530 32.867 2.20e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa2g0713 SNF2_N 2.6e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0713 K10875 - gmx:100811703 1781.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0713 2 41816115 41823114 Psa2g0713 2 41816115 41823114 ECH