Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0712 ATGGGTGCTACTGTTTATGATCAGAGCTTTAATGTTAATCTTGCGCCTTTGGAACCATCTAGAAAGAGGAAAACTAGGAGTAGAGGAAAGGGGAGTAAATCTGTGGCTGAGATTTTAGCAAAGTGGAGGGAATACAATGAACATCTTTATGCAGGTAAAGAGGATGGTAAACCGAAGCGGAAAGCGCCGGCGAAAGGTTCGAAGAAAGGGTGTATGAAAGGGAAAGGAGGGCCTCAAAATTCGGAGAATAGATATAGAGGTGTTAGACAGAGGACTTGGGGGAAATGGGTTGCTGAGATTAGGGAACCGAATAGAGGTAGTAGGCTTTGGTTAGGTACTTTTCCTACTGCTCAAGAAGCTGCTCTTGCTTATGATTATGCGGCTAGAGCTATGTATGGTCCTTCGGCGCGGCTTAATTTCCCTCATATATCGGATTATAGTTCTATTAGTGAATCTTTGAAGGACTCTTCTTCCTTGGCTGCTGATAGCTGTCCTTGTTCTTCAGTGGCAACATCTGAAACTGTGTCTAGTCATTCTGAGGTTTGTGCCCTGGATGATGTTAAGGAGATACCTAAACTACCTGTGTATATGAACAATACTCTTGATGTTTTTCGTAAAGATTATGAGGCTTCATCTCCAACTAGTAGAATGAAGCAAGAGCCAAAGGATGATGTTCATATAATAGACCCTGGTATTGGTGAAATCAAAGATGCTAAATCAGAAGGAATACAAACACAAACACAGACACAGGCACATGATGTTATGCAGGTTGAAGAAGGTCTATGTAATGACCAGATGGATCTATCATGGATTGATAACTTTGACTTCAATGGTGATTGCTTGAAGAATTTTACAATGGATGAGTTTTTTCATGTGGATGAGCTTTTGGGACATATAGACAATAATCCGATAACCGATGAACATGGGATGATGCAAAATTTGGATTTTGGACAAATGGGTTTTCCTGAAGAGACCAATCCTCAGGTTGGAACTGAAACTACTTCAAGCTTCTTTTATGAATTGGAAAATCCAGATGCTAAACTGTTGGGGAGTTTGCCTCATATGGAGGAGAACACAACATCAGGTGTTGATTTTGGATTAGATTTCTTAAAAACAGAAGAACCTGGGAACTATAATGATGCACTTGGAGATACACTATTTCCTGTTTTGGAATATGATGTGAATCATGATGCTTCAAGAACAATGTAA 1209 0.4003 MGATVYDQSFNVNLAPLEPSRKRKTRSRGKGSKSVAEILAKWREYNEHLYAGKEDGKPKRKAPAKGSKKGCMKGKGGPQNSENRYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAQEAALAYDYAARAMYGPSARLNFPHISDYSSISESLKDSSSLAADSCPCSSVATSETVSSHSEVCALDDVKEIPKLPVYMNNTLDVFRKDYEASSPTSRMKQEPKDDVHIIDPGIGEIKDAKSEGIQTQTQTQAHDVMQVEEGLCNDQMDLSWIDNFDFNGDCLKNFTMDEFFHVDELLGHIDNNPITDEHGMMQNLDFGQMGFPEETNPQVGTETTSSFFYELENPDAKLLGSLPHMEENTTSGVDFGLDFLKTEEPGNYNDALGDTLFPVLEYDVNHDASRTM* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0712 402 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Psa2g0712 402 MobiDBLite consensus disorder prediction 50 82 - -
Psa2g0712 402 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Psa2g0712 402 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 375 - -
Psa2g0712 402 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Psa2g0712 402 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 375 - -
Psa2g0712 402 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Psa2g0712 402 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Psa2g0712 402 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Psa2g0712 402 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Psa2g0712 402 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0712 Psa-Chr2 41726248 41728235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0712 21 378 AP2-EREBP Transcription Factor Family AT2G40340 38.462 6.46e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g0712 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0712 - K09286 mtr:MTR_5g083340 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0712 2 41726248 41728235 Psa2g0712 2 41726248 41728235 ECH