Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0653 ATGGTAACCCTTTCGCTTCTGCATAATCTAAAACTCGTTCCTCTCTTCAACCCTATTCTCTCCCACCAAAACCCTATTTCTTCAATCTCTCTCAAACCTTCAATACTCCGCTGTTCAAATTCCGCCAATGTTCCCGCTCAATCTCCCTCACCTCCGATTCGCATCCGACGCTGCACAAAAATCGAAGCGCAACGTGCTCTATTCGCTTACCTTCACTATACTCGACATTACACTTTGGTTCACGCAGATTTCATTGCCAAAAACTCTCCACGTTTCATAAATTCGCTTATAAGTAGAGTCAGAGTCAACGAAACAGACGATGATTTTGGTTGGGCTCTCAGAAGGTACCTTATTAATCACCCTATTAATGAATTTGAACCCTTTTTAGAGAGTATAGGGATTAAACAAAGGGATTTGAAGTTACTTTTGCCTAAAGATTTGTTTTTTCTCTGTGGTGATGATAGTGTTTTGGTTGATAATTTTCATGTCTTGTTTAATTACGGGGTTCCAAGGAATAGAATGGGGAAGATATATAAAGAAGCAAGAGAGGTTTTTGGGTATGGGAGTGGTGTTTTGTCCAAGAAATTTGAAAGTTATGAAAGTTTGGGTTTGAGTAAATCATCTCTTGTCCAGCTGTTTGTTTGTTGTCCATTGCTTTTAGTTGGCAACGAGGTTGATTCTCAATTTGTTGTTGTTCTTGATTGGTTGAAGAGAATTGGGATTGAGACCGGATGGTTTGTGAGTTGTATGTGTTCTAAAAGAACATATAGATGGGAAACGATTATTGATAGTATAGAGCTTTTTCATCAAGGGGGATATTCTGAGAAACAAATGTATGATTTGTTTAAAGCGGATCCGAAATTGTTGTTGGGGGGTTTAAGAAAGAAGACATTTTTGGTTATAGGTCGGTTGATTAAGTTGGGTCTTGACGTGAATGAGATTTGTTCTTGTTTTAGAGAGCATCCTGATATGTTGTCAAGTCCGCGAATGGAAAATTTGATGCTTGTGATTGCTTTTTTGTATAATATTAGAATGGAACAAGATGCTATTGCTCATGTTTTGTATAACTACATGCATCTCCTTAGCAGACATTCAATAAAAGGTTATAAAATGATGTCTAATGAGCTGGGAGTTGGAAAAGCTAGTTTATGTCAAATGATACAGGATGATCCATTACAATTTTTTAGTTTGGCTTTAAAACGGAAGCAGAAGAAGAATATAAATGAATTCAGATATGACCCGCAGAAGCATTTGGAGAAAACAAGTTTCTTGCGAAAACTGGGGTATACTGATAACTCTGAGGAGATGGAAATAGCTATGAAGAAGTTTCAAGGAAGAGGTGATAAGTTGCCAGAAAGATTTGATTGCTTGGTTGAAGCTGGTTTGGAATATAACACTGTAGTTGCAATGGTAAAGCAAGTTCCTTCGATTTTAAATGTTAGGAAAACTGCATTGCAAAAGAAGATTGATTTCTTAAAGAACACTTTAGGTTACCCGATAGAATGTCTCGTGGGATATCCAACATATTTATTCCGTGATTTGGACACAATTTATGCAAGATTTGCAATGTATGAGTGGTTGAAGAAGAGAAATGCAATAGATCGCGAGTTATGCTTGAGTACCATAGTTTCAACTCCTGAGAAACAGTTTGTAGAACTCTTTGTGAAAGCGCATCGTGAAGGTCCAACAGCTTGGCAAACTATAAATAGTTTATCCAACAAATTTAAGAATTAA 1734 0.3702 MVTLSLLHNLKLVPLFNPILSHQNPISSISLKPSILRCSNSANVPAQSPSPPIRIRRCTKIEAQRALFAYLHYTRHYTLVHADFIAKNSPRFINSLISRVRVNETDDDFGWALRRYLINHPINEFEPFLESIGIKQRDLKLLLPKDLFFLCGDDSVLVDNFHVLFNYGVPRNRMGKIYKEAREVFGYGSGVLSKKFESYESLGLSKSSLVQLFVCCPLLLVGNEVDSQFVVVLDWLKRIGIETGWFVSCMCSKRTYRWETIIDSIELFHQGGYSEKQMYDLFKADPKLLLGGLRKKTFLVIGRLIKLGLDVNEICSCFREHPDMLSSPRMENLMLVIAFLYNIRMEQDAIAHVLYNYMHLLSRHSIKGYKMMSNELGVGKASLCQMIQDDPLQFFSLALKRKQKKNINEFRYDPQKHLEKTSFLRKLGYTDNSEEMEIAMKKFQGRGDKLPERFDCLVEAGLEYNTVVAMVKQVPSILNVRKTALQKKIDFLKNTLGYPIECLVGYPTYLFRDLDTIYARFAMYEWLKKRNAIDRELCLSTIVSTPEKQFVELFVKAHREGPTAWQTINSLSNKFKN* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0653 577 Pfam mTERF 448 550 IPR003690 GO:0003690|GO:0006355
Psa2g0653 577 Pfam mTERF 266 407 IPR003690 GO:0003690|GO:0006355
Psa2g0653 577 Gene3D Transcription termination factor 3, mitochondrial 119 296 IPR038538 -
Psa2g0653 577 Gene3D Transcription termination factor 3, mitochondrial 297 566 IPR038538 -
Psa2g0653 577 PANTHER CGI-12 PROTEIN-RELATED 43 569 IPR003690 GO:0003690|GO:0006355
Psa2g0653 577 SMART mt_12 315 346 IPR003690 GO:0003690|GO:0006355
Psa2g0653 577 SMART mt_12 210 242 IPR003690 GO:0003690|GO:0006355
Psa2g0653 577 SMART mt_12 175 205 IPR003690 GO:0003690|GO:0006355
Psa2g0653 577 SMART mt_12 468 499 IPR003690 GO:0003690|GO:0006355
Psa2g0653 577 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 43 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0653 Psa-Chr2 34387651 34389926 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa2g0653 mTERF 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0653 - - gmx:100803162 571.237